| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116495641
Identifier: 116495641
GI number: 116495641
Start: 2177267
End: 2178694
Strand: Direct
Name: 116495641
Synonym: LSEI_2186
Alternate gene names: NA
Gene position: 2177267-2178694 (Clockwise)
Preceding gene: 116495640
Following gene: 116495645
Centisome position: 75.2
GC content: 47.13
Gene sequence:
>1428_bases ATGATTGATCGTATTGAAATTTCAGCTTGCACATCCATGATGGTCGGTAAAAAAGCATCCCTTGACGGCGCGACCTACAT CTCCCGCAACGAGGATCGCTTAGTCGCAATCTATCCAAAACGTTTTGTGGTTCAACTAGCTGTAACTGGCCGCAAGGAAA CTTATGTATCGCCATATAACAACCTGACTGTGCCACTCCCCGAATCCGGGTATCGTTACACATCCACACCCGATGCTGAC CAAAGCGCCGGACCAAATGAAGAAGACGGTTTTAATGAAAAGAATGTCGGCGAAAGTGCTACCGAAAGTGTTTATGCCAA CGAACGGGTACTTGCTTATGATCCCTTCATCAAAAATGGACTCGCGGAAGACTCCATGACAACTTTAGTGTTACCGTTTA TCAACAGTGCCCGCGATGGCGTCCGGTATCTCGGCGAACTGGTCAAAAAGTACGGTTCAGCTGAAGGCAATGGTGTCCAA TTTAACGATCAAGACGAAGTTTGGTATATGGAAATTGTCACCGGTCATCAATGGGTTGCGGTTCGCATTCCTGACGATTG TTACGCAGTTGCTGCCAACCAAATTGCGATTCAGGACATTGATTTCAATGATCCGGACAACTATATGTGGGCAGATGGCA TTCAAGATTTCGTCAAAGATCACAACTTGAATCCTGACGCCGATCACTGGAACTTCCGGCACATTTTTGGCACCGACACT GAAAAGGATCACCACTACAATACACCACGGGTTTGGTTCGCCCAACGCTACCTCAATCCAGAAATTGAGCAGGATCCGGA ATCAGCTGAATTGCCGTTCATTCGCAAGGCCAACCGCAAAATTTCCGTTGAAGATATTCAGTACATTATGAAATCCCACT TCAATGAAACCAAATTTGATCCGTTGGGTCACGGCAATGAACACGACCGCAAGACTTATCGCGCTATCTCACTTTCGCGC ACGGCCAACTCGCATATTCTGCAAATGCGTGATGCCAATCAAAATGGCGCAGCCGGCGTCCAATGGGTCGGCTTCGGTAT CCCGGCCTTTTGCCCGCACGTACCGTTTTTCACCAATGCAACCGATACGGATAAGAGTTATAGCGAGTTCCCAAAGAAGA TGGATCTGAGCTCAGCTTATTGGCTCTATGAAGCGCTCGCGATGGTTGTCGAATCGCATTATGCTGAGTTCATCGAAGAC GACTTAGCTTATCAAAAAGATCTCAATGAATGGGCACGTCGTAAAATTGCTGAAGTTGATCAAGCGGCCGCCGGGATGAG TGGCGATGACTTAACCACGTATCTGACTGAACAAAATCATGCCATTGCCAAGCACTACAATGACACAACCCGTGATTTCC TGTTCAAGCTCATCACAATGGGCACTAACTTATCGAAGCTCACCTTCAAGATGGATCCAAATCTATAG
Upstream 100 bases:
>100_bases TTGAATCCAATGGCCAAGTTCGGGCCATTTGGATTCAAGCCCGCTTATGCTCCGGTTTCTAAACGCTCCTGCTCGCGCTC AACTATTGGAGGAAATCAAC
Downstream 100 bases:
>100_bases TCAAATTTACCAACATTCAAAAAGACATCGCCGCAGCAGTTCCTGCTAAAGCGATGTCTTTTTGAATGCCGCTTATTTGT TAAAAAATTGCCGCTACAGC
Product: dipeptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 475; Mature: 475
Protein sequence:
>475_residues MIDRIEISACTSMMVGKKASLDGATYISRNEDRLVAIYPKRFVVQLAVTGRKETYVSPYNNLTVPLPESGYRYTSTPDAD QSAGPNEEDGFNEKNVGESATESVYANERVLAYDPFIKNGLAEDSMTTLVLPFINSARDGVRYLGELVKKYGSAEGNGVQ FNDQDEVWYMEIVTGHQWVAVRIPDDCYAVAANQIAIQDIDFNDPDNYMWADGIQDFVKDHNLNPDADHWNFRHIFGTDT EKDHHYNTPRVWFAQRYLNPEIEQDPESAELPFIRKANRKISVEDIQYIMKSHFNETKFDPLGHGNEHDRKTYRAISLSR TANSHILQMRDANQNGAAGVQWVGFGIPAFCPHVPFFTNATDTDKSYSEFPKKMDLSSAYWLYEALAMVVESHYAEFIED DLAYQKDLNEWARRKIAEVDQAAAGMSGDDLTTYLTEQNHAIAKHYNDTTRDFLFKLITMGTNLSKLTFKMDPNL
Sequences:
>Translated_475_residues MIDRIEISACTSMMVGKKASLDGATYISRNEDRLVAIYPKRFVVQLAVTGRKETYVSPYNNLTVPLPESGYRYTSTPDAD QSAGPNEEDGFNEKNVGESATESVYANERVLAYDPFIKNGLAEDSMTTLVLPFINSARDGVRYLGELVKKYGSAEGNGVQ FNDQDEVWYMEIVTGHQWVAVRIPDDCYAVAANQIAIQDIDFNDPDNYMWADGIQDFVKDHNLNPDADHWNFRHIFGTDT EKDHHYNTPRVWFAQRYLNPEIEQDPESAELPFIRKANRKISVEDIQYIMKSHFNETKFDPLGHGNEHDRKTYRAISLSR TANSHILQMRDANQNGAAGVQWVGFGIPAFCPHVPFFTNATDTDKSYSEFPKKMDLSSAYWLYEALAMVVESHYAEFIED DLAYQKDLNEWARRKIAEVDQAAAGMSGDDLTTYLTEQNHAIAKHYNDTTRDFLFKLITMGTNLSKLTFKMDPNL >Mature_475_residues MIDRIEISACTSMMVGKKASLDGATYISRNEDRLVAIYPKRFVVQLAVTGRKETYVSPYNNLTVPLPESGYRYTSTPDAD QSAGPNEEDGFNEKNVGESATESVYANERVLAYDPFIKNGLAEDSMTTLVLPFINSARDGVRYLGELVKKYGSAEGNGVQ FNDQDEVWYMEIVTGHQWVAVRIPDDCYAVAANQIAIQDIDFNDPDNYMWADGIQDFVKDHNLNPDADHWNFRHIFGTDT EKDHHYNTPRVWFAQRYLNPEIEQDPESAELPFIRKANRKISVEDIQYIMKSHFNETKFDPLGHGNEHDRKTYRAISLSR TANSHILQMRDANQNGAAGVQWVGFGIPAFCPHVPFFTNATDTDKSYSEFPKKMDLSSAYWLYEALAMVVESHYAEFIED DLAYQKDLNEWARRKIAEVDQAAAGMSGDDLTTYLTEQNHAIAKHYNDTTRDFLFKLITMGTNLSKLTFKMDPNL
Specific function: Unknown
COG id: COG4690
COG function: function code E; Dipeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase C69 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005322 [H]
Pfam domain/function: PF03577 Peptidase_C69 [H]
EC number: NA
Molecular weight: Translated: 54092; Mature: 54092
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDRIEISACTSMMVGKKASLDGATYISRNEDRLVAIYPKRFVVQLAVTGRKETYVSPYN CCCEEEHHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCEEEEEEEECCCCCEEECCCC NLTVPLPESGYRYTSTPDADQSAGPNEEDGFNEKNVGESATESVYANERVLAYDPFIKNG CEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHCC LAEDSMTTLVLPFINSARDGVRYLGELVKKYGSAEGNGVQFNDQDEVWYMEIVTGHQWVA CCCCCHHEEEEHHHHCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEEECCCEEEE VRIPDDCYAVAANQIAIQDIDFNDPDNYMWADGIQDFVKDHNLNPDADHWNFRHIFGTDT EEECCCHHHHHCCEEEEEECCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCEEEEECCCC EKDHHYNTPRVWFAQRYLNPEIEQDPESAELPFIRKANRKISVEDIQYIMKSHFNETKFD CCCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCHHHHCCCEECHHHHHHHHHHCCCCCCCC PLGHGNEHDRKTYRAISLSRTANSHILQMRDANQNGAAGVQWVGFGIPAFCPHVPFFTNA CCCCCCCHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCHHHCCCCCCCCCC TDTDKSYSEFPKKMDLSSAYWLYEALAMVVESHYAEFIEDDLAYQKDLNEWARRKIAEVD CCCCCHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAAAGMSGDDLTTYLTEQNHAIAKHYNDTTRDFLFKLITMGTNLSKLTFKMDPNL HHHCCCCCCCCEEEEECCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCC >Mature Secondary Structure MIDRIEISACTSMMVGKKASLDGATYISRNEDRLVAIYPKRFVVQLAVTGRKETYVSPYN CCCEEEHHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCEEEEEEEECCCCCEEECCCC NLTVPLPESGYRYTSTPDADQSAGPNEEDGFNEKNVGESATESVYANERVLAYDPFIKNG CEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHCC LAEDSMTTLVLPFINSARDGVRYLGELVKKYGSAEGNGVQFNDQDEVWYMEIVTGHQWVA CCCCCHHEEEEHHHHCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEEECCCEEEE VRIPDDCYAVAANQIAIQDIDFNDPDNYMWADGIQDFVKDHNLNPDADHWNFRHIFGTDT EEECCCHHHHHCCEEEEEECCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCEEEEECCCC EKDHHYNTPRVWFAQRYLNPEIEQDPESAELPFIRKANRKISVEDIQYIMKSHFNETKFD CCCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCHHHHCCCEECHHHHHHHHHHCCCCCCCC PLGHGNEHDRKTYRAISLSRTANSHILQMRDANQNGAAGVQWVGFGIPAFCPHVPFFTNA CCCCCCCHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCHHHCCCCCCCCCC TDTDKSYSEFPKKMDLSSAYWLYEALAMVVESHYAEFIEDDLAYQKDLNEWARRKIAEVD CCCCCHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAAAGMSGDDLTTYLTEQNHAIAKHYNDTTRDFLFKLITMGTNLSKLTFKMDPNL HHHCCCCCCCCEEEEECCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA