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The map label for this gene is ycaM [H]

Identifier: 116495462

GI number: 116495462

Start: 1970824

End: 1972479

Strand: Direct

Name: ycaM [H]

Synonym: LSEI_1996

Alternate gene names: 116495462

Gene position: 1970824-1972479 (Clockwise)

Preceding gene: 116495461

Following gene: 116495464

Centisome position: 68.07

GC content: 47.52

Gene sequence:

>1656_bases
ATGAATGAATTAGATAAACCACAGAAACAATATATCCCTTGGGTAGTTGTCGGCCTCATGGACTTTGTCACGGTCATTGG
GTTCGATGACATCATTTATAACTTCCAGAATCAAGGACTGGTCGCCTTCACCAGTTGGATCATCATGACTTTCTTCTATG
TGATTCCTTACAACCTGATTGTCGCGCACATGGGCTCGACTTTTTCCGAGCATGGCGGTGGCATCACCAGCTGGATGCGT
GAAACAAACGGCGACACTGTCGGCTACTATGCGGCTTGGTTCTACTGGATTACCGGCCTGCCCTACGTCGTCGATGTCGC
CAACTCTGTCGTCATCTCATTTGGCTGGATCGCAAATGGCAATGGCAACATTCAAGCCAACCTTGGCAATGCTTGGTTTG
GAATTCTGACCGCCGTCATTTTCGTCATCTTCATCTGGCTTCAGCATTTCTTCAAAAATAAAAGTCTGGAAATCATGTCA
ACGATCGGCGGTGGCGCGATGTTTATCATGACCGTTCTCTTCGTGGTGATGACCTTTGTCGGTTTGTCCAAAGGTGCACC
AATTGCCACGCGCCCCTTTGATTTCAAAGCTTTTATTCCCAAAGATTTCTTCTCACTTAGTTTCTTATCAACTTTCGGCC
TGTTCGTTTTTGCGATGAACGGCTCCGAGCTTGCAGCGCCATACACCAAAGACATGCGCCATCCAGCCCGCGACTTCCCC
AAGGCATTGAAAATGATTGCCATCATGACCATGTTTCTCACATTATTCGGCACTTTCTCGCTCGGCGTTTATTTCAACGC
TCATCACTTGCCGAATGACTTGAAAATGAATGGTTCCTATTATGCTTTTCAGGCAATCGGTCGCCAGTTTGGATTAGGTA
ACAGCCTGATGTATCTTTTCGCTGTTGTCCAAGGCATCTACATGTTGGCCCAACTAGCTGTTATTCTTGACGCTTCAACC
CGTGTCTTTCTATCTGACGTCGCCAAACGCTTTATGCCACGGCAATTAACGAAAATGAATGAAGACGGCTTGCCAATCAA
CGGCTATTGGATGACCACGATCCTTTGTGCTTTGATCATGGCGTTAGGTGCTTTGCTACCAAAAATCAACGACATCTTTA
ATTGGTTGTTGAACCTCAATGGCATTGTCAGCCCGTTGTCAACCTGCTTCCTTTTCTGGTCTTACACCATGGTTCGCTTA
CATCAGGATCGCTTCCCGACGCCAGCCTATACTTATCTAAAAAATCGGAAGGTTGGCTTACTCGTTGGGATCTGGATGTT
GGGAATTACGTTCCTGCTTGGCACGCTTGGCTTCTTCCCGACAGATGCGACTGCGGAGACGTTCGCTTTAATGCTGGTTT
TAAACATTGTCGTTCCGATTGGCATGGTGGCCCTTGGTGTTTTGATGCCATGGATCGCCCAACGTCAACGAAAAGCGAGA
AACGGTCTCGCATTTGGCAGAACAACTTGGCTCGGCTTCACCGTGATCATTTTGCTCGGATTGGTCAGTGCCGCCACATA
TGGCATGCATGTCAACCTGCTCAACCATCTCAATCCAATCTTGCAATGGAGCATCATTTTTGTCGTTGATCTCGTCATCA
TTGGTGTCGTTGCCAAAGTCACCGCCAACGGCCGCCGTCAAATTAGCACTGACTAA

Upstream 100 bases:

>100_bases
AACAGCCTAGACCACTATCAAGAATTCGTTATCATCGTTGCACTTGACTTGAAAATTGAGGGTCGTTTTTAAACCTTCAG
ATATTTAAGGAGCCTTTTAT

Downstream 100 bases:

>100_bases
CCGTTTTTAAATTGAATCGTCACTAGCTGCGACCGTCAAAATCATACAGGCGGTCGTCTTTTTATCCTTAAAATTATCAC
CGGCCAGCATGCGCTATCGT

Product: amino acid transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 551; Mature: 551

Protein sequence:

>551_residues
MNELDKPQKQYIPWVVVGLMDFVTVIGFDDIIYNFQNQGLVAFTSWIIMTFFYVIPYNLIVAHMGSTFSEHGGGITSWMR
ETNGDTVGYYAAWFYWITGLPYVVDVANSVVISFGWIANGNGNIQANLGNAWFGILTAVIFVIFIWLQHFFKNKSLEIMS
TIGGGAMFIMTVLFVVMTFVGLSKGAPIATRPFDFKAFIPKDFFSLSFLSTFGLFVFAMNGSELAAPYTKDMRHPARDFP
KALKMIAIMTMFLTLFGTFSLGVYFNAHHLPNDLKMNGSYYAFQAIGRQFGLGNSLMYLFAVVQGIYMLAQLAVILDAST
RVFLSDVAKRFMPRQLTKMNEDGLPINGYWMTTILCALIMALGALLPKINDIFNWLLNLNGIVSPLSTCFLFWSYTMVRL
HQDRFPTPAYTYLKNRKVGLLVGIWMLGITFLLGTLGFFPTDATAETFALMLVLNIVVPIGMVALGVLMPWIAQRQRKAR
NGLAFGRTTWLGFTVIILLGLVSAATYGMHVNLLNHLNPILQWSIIFVVDLVIIGVVAKVTANGRRQISTD

Sequences:

>Translated_551_residues
MNELDKPQKQYIPWVVVGLMDFVTVIGFDDIIYNFQNQGLVAFTSWIIMTFFYVIPYNLIVAHMGSTFSEHGGGITSWMR
ETNGDTVGYYAAWFYWITGLPYVVDVANSVVISFGWIANGNGNIQANLGNAWFGILTAVIFVIFIWLQHFFKNKSLEIMS
TIGGGAMFIMTVLFVVMTFVGLSKGAPIATRPFDFKAFIPKDFFSLSFLSTFGLFVFAMNGSELAAPYTKDMRHPARDFP
KALKMIAIMTMFLTLFGTFSLGVYFNAHHLPNDLKMNGSYYAFQAIGRQFGLGNSLMYLFAVVQGIYMLAQLAVILDAST
RVFLSDVAKRFMPRQLTKMNEDGLPINGYWMTTILCALIMALGALLPKINDIFNWLLNLNGIVSPLSTCFLFWSYTMVRL
HQDRFPTPAYTYLKNRKVGLLVGIWMLGITFLLGTLGFFPTDATAETFALMLVLNIVVPIGMVALGVLMPWIAQRQRKAR
NGLAFGRTTWLGFTVIILLGLVSAATYGMHVNLLNHLNPILQWSIIFVVDLVIIGVVAKVTANGRRQISTD
>Mature_551_residues
MNELDKPQKQYIPWVVVGLMDFVTVIGFDDIIYNFQNQGLVAFTSWIIMTFFYVIPYNLIVAHMGSTFSEHGGGITSWMR
ETNGDTVGYYAAWFYWITGLPYVVDVANSVVISFGWIANGNGNIQANLGNAWFGILTAVIFVIFIWLQHFFKNKSLEIMS
TIGGGAMFIMTVLFVVMTFVGLSKGAPIATRPFDFKAFIPKDFFSLSFLSTFGLFVFAMNGSELAAPYTKDMRHPARDFP
KALKMIAIMTMFLTLFGTFSLGVYFNAHHLPNDLKMNGSYYAFQAIGRQFGLGNSLMYLFAVVQGIYMLAQLAVILDAST
RVFLSDVAKRFMPRQLTKMNEDGLPINGYWMTTILCALIMALGALLPKINDIFNWLLNLNGIVSPLSTCFLFWSYTMVRL
HQDRFPTPAYTYLKNRKVGLLVGIWMLGITFLLGTLGFFPTDATAETFALMLVLNIVVPIGMVALGVLMPWIAQRQRKAR
NGLAFGRTTWLGFTVIILLGLVSAATYGMHVNLLNHLNPILQWSIIFVVDLVIIGVVAKVTANGRRQISTD

Specific function: Unknown

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081798, Length=476, Percent_Identity=33.8235294117647, Blast_Score=316, Evalue=2e-87,
Organism=Escherichia coli, GI48994921, Length=449, Percent_Identity=23.6080178173719, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787768, Length=302, Percent_Identity=22.5165562913907, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 61671; Mature: 61671

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELDKPQKQYIPWVVVGLMDFVTVIGFDDIIYNFQNQGLVAFTSWIIMTFFYVIPYNLI
CCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VAHMGSTFSEHGGGITSWMRETNGDTVGYYAAWFYWITGLPYVVDVANSVVISFGWIANG
HHHHCCHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHEEEEEEEECC
NGNIQANLGNAWFGILTAVIFVIFIWLQHFFKNKSLEIMSTIGGGAMFIMTVLFVVMTFV
CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHH
GLSKGAPIATRPFDFKAFIPKDFFSLSFLSTFGLFVFAMNGSELAAPYTKDMRHPARDFP
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHCCCHHHHH
KALKMIAIMTMFLTLFGTFSLGVYFNAHHLPNDLKMNGSYYAFQAIGRQFGLGNSLMYLF
HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEECCCCHHHHHHHHHHCCCHHHHHHH
AVVQGIYMLAQLAVILDASTRVFLSDVAKRFMPRQLTKMNEDGLPINGYWMTTILCALIM
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
ALGALLPKINDIFNWLLNLNGIVSPLSTCFLFWSYTMVRLHQDRFPTPAYTYLKNRKVGL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHH
LVGIWMLGITFLLGTLGFFPTDATAETFALMLVLNIVVPIGMVALGVLMPWIAQRQRKAR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGLAFGRTTWLGFTVIILLGLVSAATYGMHVNLLNHLNPILQWSIIFVVDLVIIGVVAKV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TANGRRQISTD
HCCCCCCCCCC
>Mature Secondary Structure
MNELDKPQKQYIPWVVVGLMDFVTVIGFDDIIYNFQNQGLVAFTSWIIMTFFYVIPYNLI
CCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
VAHMGSTFSEHGGGITSWMRETNGDTVGYYAAWFYWITGLPYVVDVANSVVISFGWIANG
HHHHCCHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHEEEEEEEECC
NGNIQANLGNAWFGILTAVIFVIFIWLQHFFKNKSLEIMSTIGGGAMFIMTVLFVVMTFV
CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHH
GLSKGAPIATRPFDFKAFIPKDFFSLSFLSTFGLFVFAMNGSELAAPYTKDMRHPARDFP
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHCCCHHHHH
KALKMIAIMTMFLTLFGTFSLGVYFNAHHLPNDLKMNGSYYAFQAIGRQFGLGNSLMYLF
HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEECCCCHHHHHHHHHHCCCHHHHHHH
AVVQGIYMLAQLAVILDASTRVFLSDVAKRFMPRQLTKMNEDGLPINGYWMTTILCALIM
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
ALGALLPKINDIFNWLLNLNGIVSPLSTCFLFWSYTMVRLHQDRFPTPAYTYLKNRKVGL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHH
LVGIWMLGITFLLGTLGFFPTDATAETFALMLVLNIVVPIGMVALGVLMPWIAQRQRKAR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGLAFGRTTWLGFTVIILLGLVSAATYGMHVNLLNHLNPILQWSIIFVVDLVIIGVVAKV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TANGRRQISTD
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]