| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116495437
Identifier: 116495437
GI number: 116495437
Start: 1945690
End: 1946460
Strand: Direct
Name: 116495437
Synonym: LSEI_1971
Alternate gene names: NA
Gene position: 1945690-1946460 (Clockwise)
Preceding gene: 116495436
Following gene: 116495439
Centisome position: 67.2
GC content: 39.04
Gene sequence:
>771_bases ATGACAGGTACGAATCCGATTCCAGATGAGACGACAAACGCTTTATTAAAGCCCGCTGCGGCATCTCTAGGCGAAGCTGC TGGAACAGTTCTTACATCTGGTTTCAATTTAATACTTAACCCACTACGTAAGTTTAATATTAGAAAAGAGCAAGAAATAA CAGATTATGCTACGAGAATTAGGGACCATATTGAGACGATACCAGAAGAAAATAGGGATGGATCAAAAGTCAATTTTGTT CTTAAGGCGGTTGATGACTCCAAATTCAGGCTTAATGAGCAGGAAATGCGTGAAGCATTTGCTCGCTTGATCGCCAAAGG ATTAGACAATCGTGTGAACAGTACTTTTTACCCAGAATATGCGAACATTCTTTCGAATATGTCCGTAGAAGAAGCTTCTC TAATACGTGAAATAAATAGCAACTATGCGTCTCAAGTACCATGCATTACGTTGATCGCAAGACAACCGTCTGGCAGCAAC CGTGATGTTTTAGCTACAGCATATTTATTCGATAACAACGAAGATGGTTCAGGGAAACTAGATGTACCAATAAATCTGCT TGAGCATTCAGGTATAATCAAGATAAAAGAGAACTCTTGGCTCACTGATGATCACTATAAAAAGAAGTATGAAGCGTACG AATCAAGGTGGAGAACAATTGGCGAAGCTCCCCAAAAGTTGGGTTTTGCAGATAATGAAACCTTAGACTTTCGGAAATCG TTTGTGGCCTTTTCTGATTTTGGCAAATCATTTGTGAAATTTATTGTTTAA
Upstream 100 bases:
>100_bases TGTTTATTTCCCCGAGCAATTGGTAGAAGCCAAACGGCTTGGGGCTTTTGTTGGGCACAAAAATAGCCCCGGTAGCGAGG GTTTAAGGAGAGTTGATATT
Downstream 100 bases:
>100_bases TCTAATTTTATTGTCGATTCGATTTTCCATGATTGCAAGTTCTTTAACCAACCCGGTTGTGTAAATCCGCAGGGCGATTA CAACGACAATAAGACTGACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MTGTNPIPDETTNALLKPAAASLGEAAGTVLTSGFNLILNPLRKFNIRKEQEITDYATRIRDHIETIPEENRDGSKVNFV LKAVDDSKFRLNEQEMREAFARLIAKGLDNRVNSTFYPEYANILSNMSVEEASLIREINSNYASQVPCITLIARQPSGSN RDVLATAYLFDNNEDGSGKLDVPINLLEHSGIIKIKENSWLTDDHYKKKYEAYESRWRTIGEAPQKLGFADNETLDFRKS FVAFSDFGKSFVKFIV
Sequences:
>Translated_256_residues MTGTNPIPDETTNALLKPAAASLGEAAGTVLTSGFNLILNPLRKFNIRKEQEITDYATRIRDHIETIPEENRDGSKVNFV LKAVDDSKFRLNEQEMREAFARLIAKGLDNRVNSTFYPEYANILSNMSVEEASLIREINSNYASQVPCITLIARQPSGSN RDVLATAYLFDNNEDGSGKLDVPINLLEHSGIIKIKENSWLTDDHYKKKYEAYESRWRTIGEAPQKLGFADNETLDFRKS FVAFSDFGKSFVKFIV >Mature_255_residues TGTNPIPDETTNALLKPAAASLGEAAGTVLTSGFNLILNPLRKFNIRKEQEITDYATRIRDHIETIPEENRDGSKVNFVL KAVDDSKFRLNEQEMREAFARLIAKGLDNRVNSTFYPEYANILSNMSVEEASLIREINSNYASQVPCITLIARQPSGSNR DVLATAYLFDNNEDGSGKLDVPINLLEHSGIIKIKENSWLTDDHYKKKYEAYESRWRTIGEAPQKLGFADNETLDFRKSF VAFSDFGKSFVKFIV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28868; Mature: 28737
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTNPIPDETTNALLKPAAASLGEAAGTVLTSGFNLILNPLRKFNIRKEQEITDYATRI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHH RDHIETIPEENRDGSKVNFVLKAVDDSKFRLNEQEMREAFARLIAKGLDNRVNSTFYPEY HHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH ANILSNMSVEEASLIREINSNYASQVPCITLIARQPSGSNRDVLATAYLFDNNEDGSGKL HHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEE DVPINLLEHSGIIKIKENSWLTDDHYKKKYEAYESRWRTIGEAPQKLGFADNETLDFRKS CCCCEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH FVAFSDFGKSFVKFIV HHHHHHHHHHHHHHCC >Mature Secondary Structure TGTNPIPDETTNALLKPAAASLGEAAGTVLTSGFNLILNPLRKFNIRKEQEITDYATRI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHH RDHIETIPEENRDGSKVNFVLKAVDDSKFRLNEQEMREAFARLIAKGLDNRVNSTFYPEY HHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH ANILSNMSVEEASLIREINSNYASQVPCITLIARQPSGSNRDVLATAYLFDNNEDGSGKL HHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEE DVPINLLEHSGIIKIKENSWLTDDHYKKKYEAYESRWRTIGEAPQKLGFADNETLDFRKS CCCCEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH FVAFSDFGKSFVKFIV HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA