| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116495305
Identifier: 116495305
GI number: 116495305
Start: 1834526
End: 1836055
Strand: Direct
Name: 116495305
Synonym: LSEI_1838
Alternate gene names: NA
Gene position: 1834526-1836055 (Clockwise)
Preceding gene: 116495301
Following gene: 116495309
Centisome position: 63.36
GC content: 44.18
Gene sequence:
>1530_bases ATGCTGTATGAACAAACTTTTTTAGATCGCGCTGATCTGCAGAAGTTCCAAATGTTCGCAGCGATCAAAGATACCAATGT GCAAACATACACGATCAATACCCTCAGTCAGCACCTAGACCTTTCCTATCAGCAAGGGTATAACATCTTGCAGGAACTTT TCCGCGACTTGACAGTTTTAACAAAACATCCAGAAAAAATGAAACGGAAACAAATCAGTCTTCTGGTCGATATCGATATT ACAGTGGACGATTATCATCTGTATTTGTTGCAGCACGCTATCGCCTTCCAATTTGTCGATTACATTGTGCAAGCTAATCA CCCGTCCACAGACAAGTTCTGTCGTGCCCATTATATCAGCCGTTCCACGTTGGTTCGCAAGACGTCTGCTCTCCGTAATC TTCTTAAACGGTATCAGCTTAAGTTGTCCTTTAGCGACTTAGGCTTTGCCGGTCAGGAAAGCCGCATCAGATTGTTCTTG TTCGCCTTCTATTGGATTGGCTACCACGGCGTCGATTGGCCATTCAAAGTTTTAGATGAACAAAAAATTGTTCAGGAATA CACCGCCTTACCCAGTGCCAAAAAGAATCCGGTCGATATTCTTGAAGAAGTATTGTTTTGGGCCATCAGCCGCGTGCGCA TAAGTGGCAACCATTTCGTTGACGGCGCGGCGCCATTTGACAAAATTTTCGATGAGTATTCACCTTTTCAATATCCGGTT TACACGAAAGAAATGTTTCCTGCTTACGACACACGGTTTATGAAAAGCGAAAACGACTTCTTCTACTTTCAGCAAAATCG CACCATTACATTTTTACCAACTGACGCCACGAGTGATGCTTTTATCCGCTACCTAAGTGACAAAAAAACCGTGACGACAG ATTTCACTAAGCGACTCTTGGCTTTTTTGAATGCTCATGTTCGACCTGACAGTGATTTCGATGTTTATCACGAACACGAG CTAGTTCTGAATCTAGCTCGGATCGCGTTGAACAATGAGTTTCTGGGCGGCGATTTCATGCACATCGTGGATTACTATCA ACCTGAAGGGCTGCCATACACAGAGACTAAGCTGTACCATACCTTGCAAACGTTCATCGCTGGTTTGCCAGACACCCCTG CCTACCGTCGTTTTCTTGGTAAAAATGCAGGATTTTTGCGCATTATTCATTATCTTTTGGCTCCTTATTTGCGATACTTC TCAGAAACACCAGTTGTGCAAGTGAAGCTGGTTTACCTAGGACATGATCTCCTCAATCGCCGTTTGGTAAACTTTCTGGA CGATCTTAGTGTCGTTGATTTGTTGCCAGATGATGCGCCTTGTCAGGAAGCTGACCTGGTGATTACCAGTGTCGACAATG AAGCCGCCATTAGAGCAGCAGCACCATCGGATTTCAAAGGCGAGGTTGCCACTTGGATTATTGATGATGACGACAGTGCT ATTTTTCAACTTTATATGTTGATTCGCCGCCTTTATCTCGGCAAAACAGCTTCAGCACGCTCATCAGAAACTGGTACTTT CAAGTGGTGA
Upstream 100 bases:
>100_bases TAAAGTTCAATGTTTCACTAACAAACTGTCATCATTTTTACTTTTTTTGTTATAGTTGACGTAGGTAGGGGTGAATTGCT TTTAGATAAGGGGGTGTACC
Downstream 100 bases:
>100_bases TAGCATCACCTAAAAAGGCAGTTCCCACTCAGTTCAATGTGTGGAAACTGCCTTTTTGCATCGTTAATTTCGGTGATCTC GGTGAGCGGACAGATCAACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 509; Mature: 509
Protein sequence:
>509_residues MLYEQTFLDRADLQKFQMFAAIKDTNVQTYTINTLSQHLDLSYQQGYNILQELFRDLTVLTKHPEKMKRKQISLLVDIDI TVDDYHLYLLQHAIAFQFVDYIVQANHPSTDKFCRAHYISRSTLVRKTSALRNLLKRYQLKLSFSDLGFAGQESRIRLFL FAFYWIGYHGVDWPFKVLDEQKIVQEYTALPSAKKNPVDILEEVLFWAISRVRISGNHFVDGAAPFDKIFDEYSPFQYPV YTKEMFPAYDTRFMKSENDFFYFQQNRTITFLPTDATSDAFIRYLSDKKTVTTDFTKRLLAFLNAHVRPDSDFDVYHEHE LVLNLARIALNNEFLGGDFMHIVDYYQPEGLPYTETKLYHTLQTFIAGLPDTPAYRRFLGKNAGFLRIIHYLLAPYLRYF SETPVVQVKLVYLGHDLLNRRLVNFLDDLSVVDLLPDDAPCQEADLVITSVDNEAAIRAAAPSDFKGEVATWIIDDDDSA IFQLYMLIRRLYLGKTASARSSETGTFKW
Sequences:
>Translated_509_residues MLYEQTFLDRADLQKFQMFAAIKDTNVQTYTINTLSQHLDLSYQQGYNILQELFRDLTVLTKHPEKMKRKQISLLVDIDI TVDDYHLYLLQHAIAFQFVDYIVQANHPSTDKFCRAHYISRSTLVRKTSALRNLLKRYQLKLSFSDLGFAGQESRIRLFL FAFYWIGYHGVDWPFKVLDEQKIVQEYTALPSAKKNPVDILEEVLFWAISRVRISGNHFVDGAAPFDKIFDEYSPFQYPV YTKEMFPAYDTRFMKSENDFFYFQQNRTITFLPTDATSDAFIRYLSDKKTVTTDFTKRLLAFLNAHVRPDSDFDVYHEHE LVLNLARIALNNEFLGGDFMHIVDYYQPEGLPYTETKLYHTLQTFIAGLPDTPAYRRFLGKNAGFLRIIHYLLAPYLRYF SETPVVQVKLVYLGHDLLNRRLVNFLDDLSVVDLLPDDAPCQEADLVITSVDNEAAIRAAAPSDFKGEVATWIIDDDDSA IFQLYMLIRRLYLGKTASARSSETGTFKW >Mature_509_residues MLYEQTFLDRADLQKFQMFAAIKDTNVQTYTINTLSQHLDLSYQQGYNILQELFRDLTVLTKHPEKMKRKQISLLVDIDI TVDDYHLYLLQHAIAFQFVDYIVQANHPSTDKFCRAHYISRSTLVRKTSALRNLLKRYQLKLSFSDLGFAGQESRIRLFL FAFYWIGYHGVDWPFKVLDEQKIVQEYTALPSAKKNPVDILEEVLFWAISRVRISGNHFVDGAAPFDKIFDEYSPFQYPV YTKEMFPAYDTRFMKSENDFFYFQQNRTITFLPTDATSDAFIRYLSDKKTVTTDFTKRLLAFLNAHVRPDSDFDVYHEHE LVLNLARIALNNEFLGGDFMHIVDYYQPEGLPYTETKLYHTLQTFIAGLPDTPAYRRFLGKNAGFLRIIHYLLAPYLRYF SETPVVQVKLVYLGHDLLNRRLVNFLDDLSVVDLLPDDAPCQEADLVITSVDNEAAIRAAAPSDFKGEVATWIIDDDDSA IFQLYMLIRRLYLGKTASARSSETGTFKW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59301; Mature: 59301
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYEQTFLDRADLQKFQMFAAIKDTNVQTYTINTLSQHLDLSYQQGYNILQELFRDLTVL CCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHH TKHPEKMKRKQISLLVDIDITVDDYHLYLLQHAIAFQFVDYIVQANHPSTDKFCRAHYIS HCCHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH RSTLVRKTSALRNLLKRYQLKLSFSDLGFAGQESRIRLFLFAFYWIGYHGVDWPFKVLDE HHHHHHHHHHHHHHHHHHHEEEEEHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH QKIVQEYTALPSAKKNPVDILEEVLFWAISRVRISGNHFVDGAAPFDKIFDEYSPFQYPV HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEECCCEEECCCCCHHHHHHHCCCCCCCC YTKEMFPAYDTRFMKSENDFFYFQQNRTITFLPTDATSDAFIRYLSDKKTVTTDFTKRLL CHHHHCCCHHHHHCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHCCCCEEHHHHHHHHH AFLNAHVRPDSDFDVYHEHELVLNLARIALNNEFLGGDFMHIVDYYQPEGLPYTETKLYH HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH TLQTFIAGLPDTPAYRRFLGKNAGFLRIIHYLLAPYLRYFSETPVVQVKLVYLGHDLLNR HHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHH RLVNFLDDLSVVDLLPDDAPCQEADLVITSVDNEAAIRAAAPSDFKGEVATWIIDDDDSA HHHHHHHCCHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEEECCCHH IFQLYMLIRRLYLGKTASARSSETGTFKW HHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MLYEQTFLDRADLQKFQMFAAIKDTNVQTYTINTLSQHLDLSYQQGYNILQELFRDLTVL CCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHH TKHPEKMKRKQISLLVDIDITVDDYHLYLLQHAIAFQFVDYIVQANHPSTDKFCRAHYIS HCCHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH RSTLVRKTSALRNLLKRYQLKLSFSDLGFAGQESRIRLFLFAFYWIGYHGVDWPFKVLDE HHHHHHHHHHHHHHHHHHHEEEEEHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH QKIVQEYTALPSAKKNPVDILEEVLFWAISRVRISGNHFVDGAAPFDKIFDEYSPFQYPV HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEECCCEEECCCCCHHHHHHHCCCCCCCC YTKEMFPAYDTRFMKSENDFFYFQQNRTITFLPTDATSDAFIRYLSDKKTVTTDFTKRLL CHHHHCCCHHHHHCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHCCCCEEHHHHHHHHH AFLNAHVRPDSDFDVYHEHELVLNLARIALNNEFLGGDFMHIVDYYQPEGLPYTETKLYH HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHH TLQTFIAGLPDTPAYRRFLGKNAGFLRIIHYLLAPYLRYFSETPVVQVKLVYLGHDLLNR HHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHH RLVNFLDDLSVVDLLPDDAPCQEADLVITSVDNEAAIRAAAPSDFKGEVATWIIDDDDSA HHHHHHHCCHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEEECCCHH IFQLYMLIRRLYLGKTASARSSETGTFKW HHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA