| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116495144
Identifier: 116495144
GI number: 116495144
Start: 1658788
End: 1661394
Strand: Direct
Name: 116495144
Synonym: LSEI_1663
Alternate gene names: NA
Gene position: 1658788-1661394 (Clockwise)
Preceding gene: 116495138
Following gene: 116495157
Centisome position: 57.29
GC content: 48.18
Gene sequence:
>2607_bases GTGCGACAACGTTGGTTGAAAAATTATCCGCTGATCCTCAGTTTTCTTTTACCGGGACTGCTCGTCGGCCTTTATTTTGC AATCCGTGGCACCTTTCCATTTGGATCAAGCAGTGTGTTGACAGTGGATCTGGGACAGCAATATATCGATTTCTTCGCTT ACTTGCGGCAAACCTTGCTCGGCCATCCTGGCCAACTTTTTTATGCCTTCAATAAAGCACTTGGCGGTGACATGTACGGG GTCTTTGCCTACTATTTGCTTAGCCCATTCAACTGGCTAGTTGTGTTGTTTCCAGCAGATATGCTGGATGTCGCTGCCTT CTTAATCACGGTGTTGAAAATCAGCACCATCGGCTTCACCATGGGTTGGTACGCTAAACGTCACGCCATCCACGGCATGA TGATTCCGGCGTTTGGGTTAGCCTATGCTTTGAGTGGCTGGCTGTTGGCCAACAGCTTTAATTTGATGTGGCTGGATGCT GCAATGCTACTGCCGCTCATTATTGACAGCGTTGACATACTATTCAAAGGCGGCCGCGTTATGGCCTATATTGGCTGGCT CGCCGCGGCTCTCATCATTAATTTTTATACCGGCTATATGATCGCCTTGTTTTTAATCTTGTATGCCATTTACTGGCTCA TTGCCCACACCTCCACATGGCAGCATTTTTGGCGATCTGGACTGCGGTTTGTCGGCGCCAGCGGGTTAGCTGGGATGATC AGTGCGGTTGTGCTATTGCCTACCTGGTTTCAACTGTCCCAGTCAAAAGGCACTTACACCGTGGCGACGATACGTTGGCG CTTTGAATATGCGCCAACAAGGTTTTTGAGTAAAATGCTGCCAGGCAGTTTTAACTTTGACCAAATGCCATCCGGTTATC CCAACTATTACATTGGTGCTTTAGGATTTGTACTGGTTGTCCTCTTTTTCCTATCCAAAAGTCATCCTTGGCGCCAAAAA TTGGCAGCGGCTGGCGTGACAATTGTGTTAATCCTATCGTGCATGCTAGAGCCGCTTGACTTATTGTGGCACGGCTTTCA GTTTCCGGTTTGGTATCCATACCGGTTTACATTTGTATTGTGCTTCTGGTTTTTGAGTCTGGGTATCGCTGTCCTGCCGC ATTTACAAATTGGCATTCCTTTGCAATGGTTAGGCGTTCTGCTGCTTGTGTTCAGCGCTATTTACATTGATGTCGCTGCC AACCTCAAACACTTCAGCTTTCTGACCGTGGGCCACTTGCTTTTTGGCGCAGGCTGTCTGCTGCTGGCTTTTGTCTGGTT TAGTTTGGACAATCGCCGGCCAGTCTGGTTCGGTTTTGCGATCGTGTTAATTGACTTAAGTGGCAGTTTAATCCTGACGC TTAATCAACTAGCCTATTTGAATCACAGTGATTACCACGATTATACCGCCGCCTTGATTCGCGGGACACAGACCATTCAG CAACATGATCCCGGCTTGTTTCGAATTGGAAAAACCACCATTCGAACCCGTAATGACCCCATGACGGCCAATTATCTCGG CGCAGACCAATTTAACTCCATGTTAGAGCCGGCTGTCCCCAAATTCTTCGGTCAGTTAGGACAACCTGAAGACGATGGTT CGGTGGCCTACACAAATGGCACTTTAATTACGGACAGTCTACTAGGCATGAAATATTATCTGACGCCAACCAAACGAGCG GCAAAAAAACTACCAGATGCCGGTCAACGACCAGATCTAAAGTGGTATCGGCCGATCAAAACGACGCCTACTTGGCAAAT CCTGCGATCACCTTTTGCCCAAAGTCTGGGCTTTGTAGCCGATACTGATTTGCTCAAACAACCACTCTATAGTGAAACCC CGCTTGCCAATCAGTCCTTAATCCTGCAATCAGCCCTCGGCAAGTCGGGCAGTCCTTATTTTACGCCAACAGCATTAGAG GCACCGCAACTCACCGGTGTGCGCCGAGTCTCAACTGGCAGCGCACCCACTTATGCTAAGGTTGGTCACGGTCCCCACGA TGTCACTTATCGATTTAAGCCAATACCAGGTAAAATCTATGTGTTAACCCTCGGCAGCCAGTTTGCTGACCATTTAGTGA CACTCAATCAAAATGGGCAAACTGTCACCTTGCCAGATAGTTTTAACGATACCATTACGGTCAATGTCACCCCCCGTAAT CCTAAAGCTGAACAAGTTTTGCGGTTTCGCCTGAATAAAAAAGACGCCTGGTTTGAAAATTTTGACTTATATCAAGCTGA CGCCAAGCAAGTTATCCACGATCTTAAAAAACTGCAAACAGGATCTTGGCATGTGATACAACACACGGCTACCACCGTTG AAGCGACGATCAACATTTTGCACGACCACCAAATGCTGCAAACCACGATCCCGACCGCCCCTGGTTGGCACGTGAAAATT GACAATCGACCTGTCACCGTCAAAAAAAGTTTAGGCATTTTCATGGCCGTGCCGCTAAAACCTGGGCAACACGTGATTAC CATGCGTTACGTCCCGCCATTATTAGGGTGGGGTGCTGTGATAACGGTGACTGGCCTATGCTTAACGGCTTGTTGGTATG TCGTTGATAAGCGGCGCTTCTCGCGACACCTTGTTTCGCGACGGTGA
Upstream 100 bases:
>100_bases GTCAAAACGCCATGACACGTGTCTTATGATATGCTTGAAATACGGAATACGACACCTAAAATGCCGGAATTAATCTTATT TTAGAAGTTGGTGGACACTT
Downstream 100 bases:
>100_bases GATATCCGAAGTTATTTGACCGACCATTGCAACCCAAAAGCCAGTATCCGCAGGTCTTTGATCGTAGCCAATTGATTGGC CGTTACAATCAAAAACGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 868; Mature: 868
Protein sequence:
>868_residues MRQRWLKNYPLILSFLLPGLLVGLYFAIRGTFPFGSSSVLTVDLGQQYIDFFAYLRQTLLGHPGQLFYAFNKALGGDMYG VFAYYLLSPFNWLVVLFPADMLDVAAFLITVLKISTIGFTMGWYAKRHAIHGMMIPAFGLAYALSGWLLANSFNLMWLDA AMLLPLIIDSVDILFKGGRVMAYIGWLAAALIINFYTGYMIALFLILYAIYWLIAHTSTWQHFWRSGLRFVGASGLAGMI SAVVLLPTWFQLSQSKGTYTVATIRWRFEYAPTRFLSKMLPGSFNFDQMPSGYPNYYIGALGFVLVVLFFLSKSHPWRQK LAAAGVTIVLILSCMLEPLDLLWHGFQFPVWYPYRFTFVLCFWFLSLGIAVLPHLQIGIPLQWLGVLLLVFSAIYIDVAA NLKHFSFLTVGHLLFGAGCLLLAFVWFSLDNRRPVWFGFAIVLIDLSGSLILTLNQLAYLNHSDYHDYTAALIRGTQTIQ QHDPGLFRIGKTTIRTRNDPMTANYLGADQFNSMLEPAVPKFFGQLGQPEDDGSVAYTNGTLITDSLLGMKYYLTPTKRA AKKLPDAGQRPDLKWYRPIKTTPTWQILRSPFAQSLGFVADTDLLKQPLYSETPLANQSLILQSALGKSGSPYFTPTALE APQLTGVRRVSTGSAPTYAKVGHGPHDVTYRFKPIPGKIYVLTLGSQFADHLVTLNQNGQTVTLPDSFNDTITVNVTPRN PKAEQVLRFRLNKKDAWFENFDLYQADAKQVIHDLKKLQTGSWHVIQHTATTVEATINILHDHQMLQTTIPTAPGWHVKI DNRPVTVKKSLGIFMAVPLKPGQHVITMRYVPPLLGWGAVITVTGLCLTACWYVVDKRRFSRHLVSRR
Sequences:
>Translated_868_residues MRQRWLKNYPLILSFLLPGLLVGLYFAIRGTFPFGSSSVLTVDLGQQYIDFFAYLRQTLLGHPGQLFYAFNKALGGDMYG VFAYYLLSPFNWLVVLFPADMLDVAAFLITVLKISTIGFTMGWYAKRHAIHGMMIPAFGLAYALSGWLLANSFNLMWLDA AMLLPLIIDSVDILFKGGRVMAYIGWLAAALIINFYTGYMIALFLILYAIYWLIAHTSTWQHFWRSGLRFVGASGLAGMI SAVVLLPTWFQLSQSKGTYTVATIRWRFEYAPTRFLSKMLPGSFNFDQMPSGYPNYYIGALGFVLVVLFFLSKSHPWRQK LAAAGVTIVLILSCMLEPLDLLWHGFQFPVWYPYRFTFVLCFWFLSLGIAVLPHLQIGIPLQWLGVLLLVFSAIYIDVAA NLKHFSFLTVGHLLFGAGCLLLAFVWFSLDNRRPVWFGFAIVLIDLSGSLILTLNQLAYLNHSDYHDYTAALIRGTQTIQ QHDPGLFRIGKTTIRTRNDPMTANYLGADQFNSMLEPAVPKFFGQLGQPEDDGSVAYTNGTLITDSLLGMKYYLTPTKRA AKKLPDAGQRPDLKWYRPIKTTPTWQILRSPFAQSLGFVADTDLLKQPLYSETPLANQSLILQSALGKSGSPYFTPTALE APQLTGVRRVSTGSAPTYAKVGHGPHDVTYRFKPIPGKIYVLTLGSQFADHLVTLNQNGQTVTLPDSFNDTITVNVTPRN PKAEQVLRFRLNKKDAWFENFDLYQADAKQVIHDLKKLQTGSWHVIQHTATTVEATINILHDHQMLQTTIPTAPGWHVKI DNRPVTVKKSLGIFMAVPLKPGQHVITMRYVPPLLGWGAVITVTGLCLTACWYVVDKRRFSRHLVSRR >Mature_868_residues MRQRWLKNYPLILSFLLPGLLVGLYFAIRGTFPFGSSSVLTVDLGQQYIDFFAYLRQTLLGHPGQLFYAFNKALGGDMYG VFAYYLLSPFNWLVVLFPADMLDVAAFLITVLKISTIGFTMGWYAKRHAIHGMMIPAFGLAYALSGWLLANSFNLMWLDA AMLLPLIIDSVDILFKGGRVMAYIGWLAAALIINFYTGYMIALFLILYAIYWLIAHTSTWQHFWRSGLRFVGASGLAGMI SAVVLLPTWFQLSQSKGTYTVATIRWRFEYAPTRFLSKMLPGSFNFDQMPSGYPNYYIGALGFVLVVLFFLSKSHPWRQK LAAAGVTIVLILSCMLEPLDLLWHGFQFPVWYPYRFTFVLCFWFLSLGIAVLPHLQIGIPLQWLGVLLLVFSAIYIDVAA NLKHFSFLTVGHLLFGAGCLLLAFVWFSLDNRRPVWFGFAIVLIDLSGSLILTLNQLAYLNHSDYHDYTAALIRGTQTIQ QHDPGLFRIGKTTIRTRNDPMTANYLGADQFNSMLEPAVPKFFGQLGQPEDDGSVAYTNGTLITDSLLGMKYYLTPTKRA AKKLPDAGQRPDLKWYRPIKTTPTWQILRSPFAQSLGFVADTDLLKQPLYSETPLANQSLILQSALGKSGSPYFTPTALE APQLTGVRRVSTGSAPTYAKVGHGPHDVTYRFKPIPGKIYVLTLGSQFADHLVTLNQNGQTVTLPDSFNDTITVNVTPRN PKAEQVLRFRLNKKDAWFENFDLYQADAKQVIHDLKKLQTGSWHVIQHTATTVEATINILHDHQMLQTTIPTAPGWHVKI DNRPVTVKKSLGIFMAVPLKPGQHVITMRYVPPLLGWGAVITVTGLCLTACWYVVDKRRFSRHLVSRR
Specific function: Unknown
COG id: COG4485
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 97679; Mature: 97679
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQRWLKNYPLILSFLLPGLLVGLYFAIRGTFPFGSSSVLTVDLGQQYIDFFAYLRQTLL CCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC GHPGQLFYAFNKALGGDMYGVFAYYLLSPFNWLVVLFPADMLDVAAFLITVLKISTIGFT CCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHH MGWYAKRHAIHGMMIPAFGLAYALSGWLLANSFNLMWLDAAMLLPLIIDSVDILFKGGRV HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHEECCHH MAYIGWLAAALIINFYTGYMIALFLILYAIYWLIAHTSTWQHFWRSGLRFVGASGLAGMI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHCCCCCHHHHH SAVVLLPTWFQLSQSKGTYTVATIRWRFEYAPTRFLSKMLPGSFNFDQMPSGYPNYYIGA HHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHHHH LGFVLVVLFFLSKSHPWRQKLAAAGVTIVLILSCMLEPLDLLWHGFQFPVWYPYRFTFVL HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHH CFWFLSLGIAVLPHLQIGIPLQWLGVLLLVFSAIYIDVAANLKHFSFLTVGHLLFGAGCL HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH LLAFVWFSLDNRRPVWFGFAIVLIDLSGSLILTLNQLAYLNHSDYHDYTAALIRGTQTIQ HHHHHHHHCCCCCCHHHEEEEEEEECCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHH QHDPGLFRIGKTTIRTRNDPMTANYLGADQFNSMLEPAVPKFFGQLGQPEDDGSVAYTNG HCCCCEEEECCCEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC TLITDSLLGMKYYLTPTKRAAKKLPDAGQRPDLKWYRPIKTTPTWQILRSPFAQSLGFVA CEEEHHHHCEEEEECCCHHHHHCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCC DTDLLKQPLYSETPLANQSLILQSALGKSGSPYFTPTALEAPQLTGVRRVSTGSAPTYAK CHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC VGHGPHDVTYRFKPIPGKIYVLTLGSQFADHLVTLNQNGQTVTLPDSFNDTITVNVTPRN CCCCCCCCCEEEECCCCEEEEEEECCHHHHHEEEECCCCCEEECCCCCCCEEEEEEECCC PKAEQVLRFRLNKKDAWFENFDLYQADAKQVIHDLKKLQTGSWHVIQHTATTVEATINIL CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHH HDHQMLQTTIPTAPGWHVKIDNRPVTVKKSLGIFMAVPLKPGQHVITMRYVPPLLGWGAV HHHHHHHHHCCCCCCCEEEECCCCEEEEECCCEEEEEECCCCCEEEEEECCCCHHCCHHH ITVTGLCLTACWYVVDKRRFSRHLVSRR HHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRQRWLKNYPLILSFLLPGLLVGLYFAIRGTFPFGSSSVLTVDLGQQYIDFFAYLRQTLL CCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC GHPGQLFYAFNKALGGDMYGVFAYYLLSPFNWLVVLFPADMLDVAAFLITVLKISTIGFT CCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHH MGWYAKRHAIHGMMIPAFGLAYALSGWLLANSFNLMWLDAAMLLPLIIDSVDILFKGGRV HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHEECCHH MAYIGWLAAALIINFYTGYMIALFLILYAIYWLIAHTSTWQHFWRSGLRFVGASGLAGMI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHCCCCCHHHHH SAVVLLPTWFQLSQSKGTYTVATIRWRFEYAPTRFLSKMLPGSFNFDQMPSGYPNYYIGA HHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHHHH LGFVLVVLFFLSKSHPWRQKLAAAGVTIVLILSCMLEPLDLLWHGFQFPVWYPYRFTFVL HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHH CFWFLSLGIAVLPHLQIGIPLQWLGVLLLVFSAIYIDVAANLKHFSFLTVGHLLFGAGCL HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH LLAFVWFSLDNRRPVWFGFAIVLIDLSGSLILTLNQLAYLNHSDYHDYTAALIRGTQTIQ HHHHHHHHCCCCCCHHHEEEEEEEECCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHH QHDPGLFRIGKTTIRTRNDPMTANYLGADQFNSMLEPAVPKFFGQLGQPEDDGSVAYTNG HCCCCEEEECCCEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC TLITDSLLGMKYYLTPTKRAAKKLPDAGQRPDLKWYRPIKTTPTWQILRSPFAQSLGFVA CEEEHHHHCEEEEECCCHHHHHCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCC DTDLLKQPLYSETPLANQSLILQSALGKSGSPYFTPTALEAPQLTGVRRVSTGSAPTYAK CHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC VGHGPHDVTYRFKPIPGKIYVLTLGSQFADHLVTLNQNGQTVTLPDSFNDTITVNVTPRN CCCCCCCCCEEEECCCCEEEEEEECCHHHHHEEEECCCCCEEECCCCCCCEEEEEEECCC PKAEQVLRFRLNKKDAWFENFDLYQADAKQVIHDLKKLQTGSWHVIQHTATTVEATINIL CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHH HDHQMLQTTIPTAPGWHVKIDNRPVTVKKSLGIFMAVPLKPGQHVITMRYVPPLLGWGAV HHHHHHHHHCCCCCCCEEEECCCCEEEEECCCEEEEEECCCCCEEEEEECCCCHHCCHHH ITVTGLCLTACWYVVDKRRFSRHLVSRR HHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA