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The map label for this gene is yrvJ [H]

Identifier: 116495019

GI number: 116495019

Start: 1534801

End: 1536123

Strand: Direct

Name: yrvJ [H]

Synonym: LSEI_1536

Alternate gene names: 116495019

Gene position: 1534801-1536123 (Clockwise)

Preceding gene: 116495017

Following gene: 116495028

Centisome position: 53.01

GC content: 48.83

Gene sequence:

>1323_bases
ATGAAGAAAATTGGACAATTAAAAAAATGGCCGCTGGTCGTTCTGGTGGCGCTACTTTTCGGCGTTGGTGTTGCCACAAC
CAGTGTAATGGCCAACACACAATACATGACTGTCAAGGCAGATACCGTCAACGTGCGGTTAGGTCCTGGTTTGGCATATT
CAATTATGGGACAAGTGAAATCCGGTAATGAACTGTCGATTATCGGTGCGAAAAACTCCTGGTATCAAGTCCGACTAGCT
GGTAATAAAATCGGCTGGGTTGCCTCTTGGTTGGTGGATCAAAGTGAGGCAGCAACTTCACAGGCCAAAGTGGCAACGGT
TAATCAACCGGTTAACGTCCGTGAATATGCCAGTCAAAATGCAAAACAACTAGGTTCGCTAAATGCCGGCGACAGCGTCA
AGGTCGTTTATCAAGAAGGCGCTTGGACTCAGATTGCGTACAACACCACGGCTGCATGGATCACCAGCAGCAGCGTTCAG
TTAACCGGCCAAACCACCAATTTAGCCCAGCCTGCGCAAACGGCGTTGGCAAACGAGAAAAGTGCGCCGGCGTTGAAGGT
AACAACCAATACGATGACCAACCTTCGCAATGCCGCCGGTATCAATGCGCCTTCGGTTGAAAAGCTAGACAAAGGCACCG
AACTGACGGTCTCTAAGCAACAAGATGATTGGTATGCGGTCACGGCACCAGATGGCAAAACTGGCTACGTTGCGAGCTGG
ACCGTCAGCGCACCAAATGACGGGCAAACGCAAAAAGCCGCTACAAAACTGTCAGAGGCTACGATTGTCCTTGACCCAGG
TCACGGCGGCTCCGACACTGGTGCGATTGCCAATGATGGCACCGACTATGAAAAAACATACACGCTTAAGACGGCCAATT
TAGTTGCTAACTCTTTACGCGCGGCTGGTGCCAATGTCATTATGACCCGTACAACGGATACTTTCGTTGATTTAGCACCT
CGACCAAATACTGCCAACAATGCTCACGCGGATGCTTTCATCTCTTTCCATTTTGACTCCAGTCCATCCAAGAATTCAGC
ATCTGGGATCACCACCTATTACTACGACAGCAAAAAAGACCTTGCCTTGGCCAAGTCCGTCAACAGTGCTTTCAGCGGCC
TTCCGCTGGAAAACCGCGGTGTCGCCTTTGGTAATTTCGAAGTCCTGCGTGATAATAAACAACCTGCTATTCTGAACGAG
ATGGGTTACATCAACAACGATAAAGATTTCCGTCAAATCAAAGATCCGAGCTATCAGTCCAAGATTGCTACCGATATTGT
AAATGGCCTAAACGCCTACTTTAAGGCAGGCAATCATCAGTGA

Upstream 100 bases:

>100_bases
TTGTTGTCTAGTTCTTAACGCAACTTAAACGTGATTACGCCACTTTTTCTAATGCGATTTGCTATAATAGGATTAACTAT
CTTCAGAAAATGGTGGGCTC

Downstream 100 bases:

>100_bases
TGAACTAAAAAAGGTCCTGACATTGAGTTTACAACTTCAATGCAGGACCTTTTTTAGAGTCGATAATAACTTTTAAACGC
GGAATAATGGCGGGATCTCT

Product: N-acetylmuramoyl-L-alanine amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MKKIGQLKKWPLVVLVALLFGVGVATTSVMANTQYMTVKADTVNVRLGPGLAYSIMGQVKSGNELSIIGAKNSWYQVRLA
GNKIGWVASWLVDQSEAATSQAKVATVNQPVNVREYASQNAKQLGSLNAGDSVKVVYQEGAWTQIAYNTTAAWITSSSVQ
LTGQTTNLAQPAQTALANEKSAPALKVTTNTMTNLRNAAGINAPSVEKLDKGTELTVSKQQDDWYAVTAPDGKTGYVASW
TVSAPNDGQTQKAATKLSEATIVLDPGHGGSDTGAIANDGTDYEKTYTLKTANLVANSLRAAGANVIMTRTTDTFVDLAP
RPNTANNAHADAFISFHFDSSPSKNSASGITTYYYDSKKDLALAKSVNSAFSGLPLENRGVAFGNFEVLRDNKQPAILNE
MGYINNDKDFRQIKDPSYQSKIATDIVNGLNAYFKAGNHQ

Sequences:

>Translated_440_residues
MKKIGQLKKWPLVVLVALLFGVGVATTSVMANTQYMTVKADTVNVRLGPGLAYSIMGQVKSGNELSIIGAKNSWYQVRLA
GNKIGWVASWLVDQSEAATSQAKVATVNQPVNVREYASQNAKQLGSLNAGDSVKVVYQEGAWTQIAYNTTAAWITSSSVQ
LTGQTTNLAQPAQTALANEKSAPALKVTTNTMTNLRNAAGINAPSVEKLDKGTELTVSKQQDDWYAVTAPDGKTGYVASW
TVSAPNDGQTQKAATKLSEATIVLDPGHGGSDTGAIANDGTDYEKTYTLKTANLVANSLRAAGANVIMTRTTDTFVDLAP
RPNTANNAHADAFISFHFDSSPSKNSASGITTYYYDSKKDLALAKSVNSAFSGLPLENRGVAFGNFEVLRDNKQPAILNE
MGYINNDKDFRQIKDPSYQSKIATDIVNGLNAYFKAGNHQ
>Mature_440_residues
MKKIGQLKKWPLVVLVALLFGVGVATTSVMANTQYMTVKADTVNVRLGPGLAYSIMGQVKSGNELSIIGAKNSWYQVRLA
GNKIGWVASWLVDQSEAATSQAKVATVNQPVNVREYASQNAKQLGSLNAGDSVKVVYQEGAWTQIAYNTTAAWITSSSVQ
LTGQTTNLAQPAQTALANEKSAPALKVTTNTMTNLRNAAGINAPSVEKLDKGTELTVSKQQDDWYAVTAPDGKTGYVASW
TVSAPNDGQTQKAATKLSEATIVLDPGHGGSDTGAIANDGTDYEKTYTLKTANLVANSLRAAGANVIMTRTTDTFVDLAP
RPNTANNAHADAFISFHFDSSPSKNSASGITTYYYDSKKDLALAKSVNSAFSGLPLENRGVAFGNFEVLRDNKQPAILNE
MGYINNDKDFRQIKDPSYQSKIATDIVNGLNAYFKAGNHQ

Specific function: Probably involved in cell-wall metabolism [H]

COG id: COG0860

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788776, Length=219, Percent_Identity=29.2237442922374, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508
- InterPro:   IPR017293
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 46997; Mature: 46997

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIGQLKKWPLVVLVALLFGVGVATTSVMANTQYMTVKADTVNVRLGPGLAYSIMGQVK
CCCCCCCCCCHHHHHHHHHHHCHHHHHHHEECCEEEEEEEEEEEEEECCCEEEEEEEECC
SGNELSIIGAKNSWYQVRLAGNKIGWVASWLVDQSEAATSQAKVATVNQPVNVREYASQN
CCCEEEEEECCCCEEEEEECCCCCCCHHHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHH
AKQLGSLNAGDSVKVVYQEGAWTQIAYNTTAAWITSSSVQLTGQTTNLAQPAQTALANEK
HHHHCCCCCCCCEEEEEECCCEEEEEEECEEEEEECCEEEEEECCCCCCCHHHHHHCCCC
SAPALKVTTNTMTNLRNAAGINAPSVEKLDKGTELTVSKQQDDWYAVTAPDGKTGYVASW
CCCEEEEECCHHHHHHHHCCCCCCCHHHHCCCCEEEEEECCCCEEEEECCCCCCCEEEEE
TVSAPNDGQTQKAATKLSEATIVLDPGHGGSDTGAIANDGTDYEKTYTLKTANLVANSLR
EEECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHH
AAGANVIMTRTTDTFVDLAPRPNTANNAHADAFISFHFDSSPSKNSASGITTYYYDSKKD
HCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCC
LALAKSVNSAFSGLPLENRGVAFGNFEVLRDNKQPAILNEMGYINNDKDFRQIKDPSYQS
HHHHHHHHHHHCCCCCCCCCEEECCEEEEECCCCCCHHHHCCCCCCCCHHHHHCCCCHHH
KIATDIVNGLNAYFKAGNHQ
HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKIGQLKKWPLVVLVALLFGVGVATTSVMANTQYMTVKADTVNVRLGPGLAYSIMGQVK
CCCCCCCCCCHHHHHHHHHHHCHHHHHHHEECCEEEEEEEEEEEEEECCCEEEEEEEECC
SGNELSIIGAKNSWYQVRLAGNKIGWVASWLVDQSEAATSQAKVATVNQPVNVREYASQN
CCCEEEEEECCCCEEEEEECCCCCCCHHHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHH
AKQLGSLNAGDSVKVVYQEGAWTQIAYNTTAAWITSSSVQLTGQTTNLAQPAQTALANEK
HHHHCCCCCCCCEEEEEECCCEEEEEEECEEEEEECCEEEEEECCCCCCCHHHHHHCCCC
SAPALKVTTNTMTNLRNAAGINAPSVEKLDKGTELTVSKQQDDWYAVTAPDGKTGYVASW
CCCEEEEECCHHHHHHHHCCCCCCCHHHHCCCCEEEEEECCCCEEEEECCCCCCCEEEEE
TVSAPNDGQTQKAATKLSEATIVLDPGHGGSDTGAIANDGTDYEKTYTLKTANLVANSLR
EEECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHH
AAGANVIMTRTTDTFVDLAPRPNTANNAHADAFISFHFDSSPSKNSASGITTYYYDSKKD
HCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCC
LALAKSVNSAFSGLPLENRGVAFGNFEVLRDNKQPAILNEMGYINNDKDFRQIKDPSYQS
HHHHHHHHHHHCCCCCCCCCEEECCEEEEECCCCCCHHHHCCCCCCCCHHHHHCCCCHHH
KIATDIVNGLNAYFKAGNHQ
HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]