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The map label for this gene is nrdF [H]

Identifier: 116494955

GI number: 116494955

Start: 1463069

End: 1464049

Strand: Direct

Name: nrdF [H]

Synonym: LSEI_1469

Alternate gene names: 116494955

Gene position: 1463069-1464049 (Clockwise)

Preceding gene: 116494954

Following gene: 116494956

Centisome position: 50.53

GC content: 43.22

Gene sequence:

>981_bases
ATGGCAAAACAGTATATTGCGATCAATTGGAACGCGATCGAAGACGAAGTTGATAAAGCAACTTGGGAAAAATTGACGGA
ACAATTTTGGTTAGACACCCGGATTCCGCTGTCCAACGACTTGGACGACTGGCGATCTCTCAATCATGACGAGCAATGGG
TTGTCGGCCACGTGTTCGGTGGCTTGACCTTGTTGGATACCCTGCAGAGTCAGGACGGCATGGCAAGTTTGCGGCAGAAT
ATTCGCACCCAGCAAGAAACGGCTGTGTTGAACAACATTCAGTTTATGGAAAGTGTGCATGCAAAGAGTTACTCTTCGAT
TTTTTCAACGCTAAACACACCAGCAGAAATCGATGAGATCTTCGATTGGACCAATCATAACGAGCATCTGCAATACAAAG
CCAACAAAATTAATGATATTTATCATAACGGTTCGGCGCTGCAGAAGAAGATTGCCAGTGTTTTCTTGGAAACCTTCTTG
TTTTATTCAGGCTTCTTTACCCCGTTGTATTACTTGGGCAACAATAAGCTAACTAACGTGGCAGAAATCATTAAGCTGAT
TATTCGTGATGAAAGTGTTCATGGCACTTATATCGGCTATAAATTCCAGCTCGGATTCAACGAGTTGCCGGAAGCTGAAC
AACAAACATTGAAGGATTGGATGTACGACTTGTTGTTCGATTTGTATGAAAACGAGGAAAAGTACACTAACGATCTTTAC
GCGAAGACCAACTGGACGGATGAAGTTTTGACTTTCTTGCGTTATAACGCCAACAAAGCCTTGATGAATTTAGGTCAGGA
AACGGCTTTTCCTGACACGGCTGATGACGTCAACCCAATCGTAATGAATGGGATTTCAACGTCTACCGCCAACCATGACT
TCTTCTCACAAGTTGGTAATGGTTACCGGCTGGGTCAAGTTGAAGCGATGCAAGATGATGATTATCAGTTCTCAACTGAA
GATGAAGACCACGACAAATAA

Upstream 100 bases:

>100_bases
GATCAAGAAGAAATCGGCAGCAACGCTTGTGAAAGCTGCTCAATCTGATAATCTTTTAACAGGGGGAGTTTCCCCTGTTT
TTACATAAGGGAGCGTAAAC

Downstream 100 bases:

>100_bases
AGCCGTCGCGGCAACAAAAAAAGCCACTGCAATGCTTTGCGGTGGCTTTTTTGTTTTGGTCTGATTAGGACGATGATCAT
TCACTGTCTTTAATGGTTTG

Product: ribonucleotide-diphosphate reductase subunit beta

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MAKQYIAINWNAIEDEVDKATWEKLTEQFWLDTRIPLSNDLDDWRSLNHDEQWVVGHVFGGLTLLDTLQSQDGMASLRQN
IRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKINDIYHNGSALQKKIASVFLETFL
FYSGFFTPLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFDLYENEEKYTNDLY
AKTNWTDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIVMNGISTSTANHDFFSQVGNGYRLGQVEAMQDDDYQFSTE
DEDHDK

Sequences:

>Translated_326_residues
MAKQYIAINWNAIEDEVDKATWEKLTEQFWLDTRIPLSNDLDDWRSLNHDEQWVVGHVFGGLTLLDTLQSQDGMASLRQN
IRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKINDIYHNGSALQKKIASVFLETFL
FYSGFFTPLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFDLYENEEKYTNDLY
AKTNWTDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIVMNGISTSTANHDFFSQVGNGYRLGQVEAMQDDDYQFSTE
DEDHDK
>Mature_325_residues
AKQYIAINWNAIEDEVDKATWEKLTEQFWLDTRIPLSNDLDDWRSLNHDEQWVVGHVFGGLTLLDTLQSQDGMASLRQNI
RTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKINDIYHNGSALQKKIASVFLETFLF
YSGFFTPLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFDLYENEEKYTNDLYA
KTNWTDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIVMNGISTSTANHDFFSQVGNGYRLGQVEAMQDDDYQFSTED
EDHDK

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1789031, Length=312, Percent_Identity=50.6410256410256, Blast_Score=320, Evalue=1e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 37827; Mature: 37696

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQYIAINWNAIEDEVDKATWEKLTEQFWLDTRIPLSNDLDDWRSLNHDEQWVVGHVFG
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHH
GLTLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FDWTNHNEHLQYKANKINDIYHNGSALQKKIASVFLETFLFYSGFFTPLYYLGNNKLTNV
HCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFDLYENEEKYTNDLY
HHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHE
AKTNWTDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIVMNGISTSTANHDFFSQVGN
ECCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHCCC
GYRLGQVEAMQDDDYQFSTEDEDHDK
CEEECEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKQYIAINWNAIEDEVDKATWEKLTEQFWLDTRIPLSNDLDDWRSLNHDEQWVVGHVFG
CCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHH
GLTLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FDWTNHNEHLQYKANKINDIYHNGSALQKKIASVFLETFLFYSGFFTPLYYLGNNKLTNV
HCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFDLYENEEKYTNDLY
HHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHE
AKTNWTDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIVMNGISTSTANHDFFSQVGN
ECCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHCCC
GYRLGQVEAMQDDDYQFSTEDEDHDK
CEEECEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]