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The map label for this gene is xerS [H]

Identifier: 116494901

GI number: 116494901

Start: 1407482

End: 1408594

Strand: Direct

Name: xerS [H]

Synonym: LSEI_1415

Alternate gene names: 116494901

Gene position: 1407482-1408594 (Clockwise)

Preceding gene: 116494900

Following gene: 116494902

Centisome position: 48.61

GC content: 47.08

Gene sequence:

>1113_bases
GTGTCGACACAAAATTATTCGAAATTAATTCATACAATGCTACCTGCCCTGCCGGATTACATTCAGGACTATTATCAGAG
TCAAAAAGCGATCCCGATCGCCGATTCGACGCTCTATCAGTATTTACATTTTTATCAAGAGTTTCTGAACTGGCTGATTA
ACAGTGGTGTGACGGCCGCTTCCTCACCGCAAACCGTCCCGCTGACCGTGTTAGAACATTTGTCGTTGCGTGATGCCCAG
GCATTTATGGCGTATTTGCTTGAACGGCCTTCCAAGACGCACCACAACAAGCGAATGACGCGTCGCAGTGTTGCTTTGCG
CTTAGTCGGGATCAAGGCGCTTTATCGGTTTTTGACGGAGGAAAGTGAACCCCATGCAGATGGCGAACCTTATTTCTATC
GGAATGTCTGGAACAAGGTAAAACTTAAAACCCATACTGAAACTGCGAGTTACCGAAACCACAAGCTACAGGAAATGCTG
TTTGTGGACGGTGAAGATGCTAAGTTTTTACAGTGGTTGGATCAAAGTTATGCGCAACAACTGCCAGCCAAGCCGCGGCG
CTATTTTGAGGCGACAAAAGTGCGCAACTTGGCCATGATTGCCTTACTGTTTGGCTCAGGGGTTCGAGTCAGCGAATTGG
TGAATATGAATCTGGAAGATTTGAACATGGATCGGCATACGGTCCAAGTTGTTCGCAAAGGCAACTTTCAGGATCGCGTC
AATTTTGCAGACTGGATTGATCCGTATGTTCAGGCTTACTTAACGCAGCGAGCGGCTATTATTGGTTATCAAAAGCCGAC
TTCTCCCCTGTTTGTGACAGTTGTCGGCCAAAAAATCAATCGGATTCGCCAAAATACAATCGAAGCCTTTTTCAAGCGTT
ATACAACCGATTATGGTCGGCCATCAACACCACATAAGGCCCGGCACACTTTGGGAACCAATATTTATACGGTCACCAAG
GATGTGCAGCAGGTTGCGGATCAGCTCGGGCAAACGACCACAAGTGCGACAGATCTGTATATCAATCTCAGTGATAAAAG
CGGTAAAGAAGCCTTGCGTGAGGTTTCTGAAACGGCCGCAAAAGCAACTGATCGCGGGCATGACCAAGCTTAA

Upstream 100 bases:

>100_bases
CCACCGTTCATTTTTCATCAACACTAGCCCTCGCCAAGGACAGTTGTTTTCGCGTATACTAACATTATCTAAAAGAAAAC
ATACGTTCGAGGTGAAATCT

Downstream 100 bases:

>100_bases
TTGACGAGGGATGGTTACTGAAGTTGATCATCGAGTCTTTTGAAAGCTTATTTCGCCAGACCGGCCTATAATCGAGTCAG
ATCGAAACGGGAAGGTGGGA

Product: site-specific tyrosine recombinase XerS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MSTQNYSKLIHTMLPALPDYIQDYYQSQKAIPIADSTLYQYLHFYQEFLNWLINSGVTAASSPQTVPLTVLEHLSLRDAQ
AFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLTEESEPHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEML
FVDGEDAKFLQWLDQSYAQQLPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDRV
NFADWIDPYVQAYLTQRAAIIGYQKPTSPLFVTVVGQKINRIRQNTIEAFFKRYTTDYGRPSTPHKARHTLGTNIYTVTK
DVQQVADQLGQTTTSATDLYINLSDKSGKEALREVSETAAKATDRGHDQA

Sequences:

>Translated_370_residues
MSTQNYSKLIHTMLPALPDYIQDYYQSQKAIPIADSTLYQYLHFYQEFLNWLINSGVTAASSPQTVPLTVLEHLSLRDAQ
AFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLTEESEPHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEML
FVDGEDAKFLQWLDQSYAQQLPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDRV
NFADWIDPYVQAYLTQRAAIIGYQKPTSPLFVTVVGQKINRIRQNTIEAFFKRYTTDYGRPSTPHKARHTLGTNIYTVTK
DVQQVADQLGQTTTSATDLYINLSDKSGKEALREVSETAAKATDRGHDQA
>Mature_369_residues
STQNYSKLIHTMLPALPDYIQDYYQSQKAIPIADSTLYQYLHFYQEFLNWLINSGVTAASSPQTVPLTVLEHLSLRDAQA
FMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLTEESEPHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEMLF
VDGEDAKFLQWLDQSYAQQLPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDRVN
FADWIDPYVQAYLTQRAAIIGYQKPTSPLFVTVVGQKINRIRQNTIEAFFKRYTTDYGRPSTPHKARHTLGTNIYTVTKD
VQQVADQLGQTTTSATDLYINLSDKSGKEALREVSETAAKATDRGHDQA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerS subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=152, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789261, Length=315, Percent_Identity=22.8571428571429, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42598; Mature: 42467

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQNYSKLIHTMLPALPDYIQDYYQSQKAIPIADSTLYQYLHFYQEFLNWLINSGVTAA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
SSPQTVPLTVLEHLSLRDAQAFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLTE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ESEPHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEMLFVDGEDAKFLQWLDQSYAQQ
CCCCCCCCCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHH
LPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDRV
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCHHHHHHHHHCCCCHHCC
NFADWIDPYVQAYLTQRAAIIGYQKPTSPLFVTVVGQKINRIRQNTIEAFFKRYTTDYGR
CHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKEALREVSETAA
CCCCHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
KATDRGHDQA
HHHCCCCCCC
>Mature Secondary Structure 
STQNYSKLIHTMLPALPDYIQDYYQSQKAIPIADSTLYQYLHFYQEFLNWLINSGVTAA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
SSPQTVPLTVLEHLSLRDAQAFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLTE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ESEPHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEMLFVDGEDAKFLQWLDQSYAQQ
CCCCCCCCCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHH
LPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDRV
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCHHHHHHHHHCCCCHHCC
NFADWIDPYVQAYLTQRAAIIGYQKPTSPLFVTVVGQKINRIRQNTIEAFFKRYTTDYGR
CHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKEALREVSETAA
CCCCHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
KATDRGHDQA
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA