| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is yrrC [H]
Identifier: 116494786
GI number: 116494786
Start: 1275333
End: 1277801
Strand: Direct
Name: yrrC [H]
Synonym: LSEI_1295
Alternate gene names: 116494786
Gene position: 1275333-1277801 (Clockwise)
Preceding gene: 116494785
Following gene: 116494787
Centisome position: 44.05
GC content: 47.63
Gene sequence:
>2469_bases ATGGACACGCGTGAGGAGACTGTCACCGGTCGGGTCAAAAGTATCTTTTTCCAGAATCCAACAAATTTTTTTAAAATTCT GCTGATCGAAATCTCTGCGACGACTATCACCTGGACAGAGTCAGATATTGTGGTGACAGGAACGTTTGGTGATATTAAGG AAGATGCGACCTACACGTTCACTGGGCATGTCGTGGATCATCCTAAGTATGGGCAGCAGTTTCAAGCAGACAATTACCAT GCGGATCAGCCGACGAATAAAAGTGGGCTGGTCGATTATTTGAGTTCGGATAAGTTCCCGGGGATCGGTCCGAAAACGGC AACGAAAATTATCGATCATTTGGGTATGGATGCTATTGACAAGATTCTGGATGATCCGAAGGTTTTGGCGGGCTTAGGCA TGACAGCTGCCAAGCGTGATATGTTGGCGACGAATCTGAAATCGAACCAAGGCATGGAACGGGTTATTATTGGTCTTAAC GATTACGGCTTTACTAGCAATATGGCAGGTCGTATTTACCAACGATATCAAAATGACGCTTTAGATGTGATTAAGCACAA TCCGTATCAATTGATTAACGATATTGATGGTATCGGCTTTACTCGGGCTGATCAGATTGCGGCAAAATTGGCGATTGCCC CGACTTCGCAGCTTCGTCTTGGCGGTGCAGTGATGGATACCCTGCAGCGGTTGACTGATGGCGAAGGTGATACCTATGTG ACGCTGAAGTCATTGGTCACTCAGACACTTGATTTATTGGAACGGGCGAGAAACGTTGCCGTTTCGCCAGACGCAGTAGG ACAGGCAATTGTGACGCTGGCTAAAGACAACGCCCTGATTGCAGAAGGCGACCGCATTTTCCCGAAACGATTATTCGATG CTGAATGGCAGATTGGTCGGCAACTAAAAGGACTGGCAGAGGCAGACGCAACGGCTACCGAACCTGAATTGGCTGAGATT GAAAAAACGTTAGCGGCGGTCGAGGCGGATACCGGTATTGCGTATGATGCGACACAAAGAAAAGCCATTGTCACGGCGTT ACAGTCGCCCATTTTTCTGTTGACTGGAGGACCGGGTACTGGGAAAACCACAGTAACAGATGGTATCGTGCGGACGTATG CACGGTTGCATGACCTTTCATTGGATCTTGATCAGTATACGACTGACGAGCCATTTCCAATCATGCTGGCAGCGCCAACA GGACGGGCAGCGAAACGGATTAGTGAAACCACCCAACTGCCAGCCAGTACGATTCATCGCCTGCTCGGTTTAGGTGTTGA CACGCAAGAATTTGCACCTAATGAGTTACCAAATGGCCTGTTGATTATTGATGAGATGTCAATGGTTGACACTTACTTGT TCCGGACGCTTTTAACGGCATTACATCCCGGAATGAAAATTGTCTTGGTTGGCGATAAAGACCAATTACCAAGTGTCGGT CCTGGACAAGTATTCGCTGATTTATTGCGCAGCGGCGTGCTGCCGCAAACAGCGCTGACGCATATTCATCGTCAGGATGC CGACAGTTCAATTATTCCGCTAGCGCATGCAGTGAATGCTGGCAAGTTGCCGGATGATTTTACCAAGCCGCAAGTTGATC GCAGTTTTTTGGCGTGTGCGCCTAGTCAGGTACCTGAAGTTGTCGGACAAGTGGTGCAACGAGCCGCAGTCAAACAATTC TCGATCGCGGATATTCAAGTGTTGGCACCTATGTACCGCGGAACCGCTGGCATTGATCGTTTGAATCCGTTACTGCAAAA CATTTTGAATCCAAAACGCAGTGCCCGAACGAAAGCAATTCAGTTTGGAGAAACGGAATATCGAATTGGTGATAAGGTGT TGCAACTGGTCAATGATCCCAACCAAAATGTTTTTAACGGTGAAATCGGTCAGATTGTCGGCATTACTTTGGGCAAGGAA GCCGAAAGCAAAACGGACGAATTAACGATTGATTTTGACGGCAATGAAATCACTTGCAAACGCAGTGATTTTAATAAGAT TACGCTTGCTTATGCCACCTCGATTCATAAAGCCCAAGGCAGTGAGTTTCCGATGGTGATTTTGCCGCTAACCTTGCAAA GCCGCCGGATGTTGCGACGTAACTTGTTGTACACCGCCATTACGCGGGCTAAATCATTTTTGATTTTGGTTGGCGAACTG GCAGCCTTTCAGGAAGCAGTCAGTGAAGTAGCCGTTAATCGACATACTGGGCTGGTCGATCGGCTCATGACCGTGTTTGG CAAAACCGTTGCCCCTCAGGTTGCTGATGATTCAGCAACCAAGGATATTTCAGCAAGTCCCAGTGAGCCGCAAATTGACA CAACTGCACTTGACTTGGATAATGAAGTTAAACAACAACCACCGGCAGCGCACCAATTAACGCCTGCCTTGGTGGCTTCT CAACGAATCGATCCCATGATTGGGATGGATGGTATCACTCCGCAAATGTTTATGACGAAGGAGAATTAA
Upstream 100 bases:
>100_bases TATTTGAACAAGGCCAAGGCACTCGATCCAAAAGGGTATGATCAAAAAGCTAACATTGTCGCTGATATCAACCGATTCTT GCGATTGCAGGAGGGTCAAG
Downstream 100 bases:
>100_bases CTAGCTATGGAGGACAACATACGCAAGTCACTGGTGATTAAGCCAGTGACGCCTCAGGATCTCGAGCAGTTCAACGATCT ATTAACTTATGTGTTTCAAG
Product: exonuclease V subunit alpha
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 822; Mature: 822
Protein sequence:
>822_residues MDTREETVTGRVKSIFFQNPTNFFKILLIEISATTITWTESDIVVTGTFGDIKEDATYTFTGHVVDHPKYGQQFQADNYH ADQPTNKSGLVDYLSSDKFPGIGPKTATKIIDHLGMDAIDKILDDPKVLAGLGMTAAKRDMLATNLKSNQGMERVIIGLN DYGFTSNMAGRIYQRYQNDALDVIKHNPYQLINDIDGIGFTRADQIAAKLAIAPTSQLRLGGAVMDTLQRLTDGEGDTYV TLKSLVTQTLDLLERARNVAVSPDAVGQAIVTLAKDNALIAEGDRIFPKRLFDAEWQIGRQLKGLAEADATATEPELAEI EKTLAAVEADTGIAYDATQRKAIVTALQSPIFLLTGGPGTGKTTVTDGIVRTYARLHDLSLDLDQYTTDEPFPIMLAAPT GRAAKRISETTQLPASTIHRLLGLGVDTQEFAPNELPNGLLIIDEMSMVDTYLFRTLLTALHPGMKIVLVGDKDQLPSVG PGQVFADLLRSGVLPQTALTHIHRQDADSSIIPLAHAVNAGKLPDDFTKPQVDRSFLACAPSQVPEVVGQVVQRAAVKQF SIADIQVLAPMYRGTAGIDRLNPLLQNILNPKRSARTKAIQFGETEYRIGDKVLQLVNDPNQNVFNGEIGQIVGITLGKE AESKTDELTIDFDGNEITCKRSDFNKITLAYATSIHKAQGSEFPMVILPLTLQSRRMLRRNLLYTAITRAKSFLILVGEL AAFQEAVSEVAVNRHTGLVDRLMTVFGKTVAPQVADDSATKDISASPSEPQIDTTALDLDNEVKQQPPAAHQLTPALVAS QRIDPMIGMDGITPQMFMTKEN
Sequences:
>Translated_822_residues MDTREETVTGRVKSIFFQNPTNFFKILLIEISATTITWTESDIVVTGTFGDIKEDATYTFTGHVVDHPKYGQQFQADNYH ADQPTNKSGLVDYLSSDKFPGIGPKTATKIIDHLGMDAIDKILDDPKVLAGLGMTAAKRDMLATNLKSNQGMERVIIGLN DYGFTSNMAGRIYQRYQNDALDVIKHNPYQLINDIDGIGFTRADQIAAKLAIAPTSQLRLGGAVMDTLQRLTDGEGDTYV TLKSLVTQTLDLLERARNVAVSPDAVGQAIVTLAKDNALIAEGDRIFPKRLFDAEWQIGRQLKGLAEADATATEPELAEI EKTLAAVEADTGIAYDATQRKAIVTALQSPIFLLTGGPGTGKTTVTDGIVRTYARLHDLSLDLDQYTTDEPFPIMLAAPT GRAAKRISETTQLPASTIHRLLGLGVDTQEFAPNELPNGLLIIDEMSMVDTYLFRTLLTALHPGMKIVLVGDKDQLPSVG PGQVFADLLRSGVLPQTALTHIHRQDADSSIIPLAHAVNAGKLPDDFTKPQVDRSFLACAPSQVPEVVGQVVQRAAVKQF SIADIQVLAPMYRGTAGIDRLNPLLQNILNPKRSARTKAIQFGETEYRIGDKVLQLVNDPNQNVFNGEIGQIVGITLGKE AESKTDELTIDFDGNEITCKRSDFNKITLAYATSIHKAQGSEFPMVILPLTLQSRRMLRRNLLYTAITRAKSFLILVGEL AAFQEAVSEVAVNRHTGLVDRLMTVFGKTVAPQVADDSATKDISASPSEPQIDTTALDLDNEVKQQPPAAHQLTPALVAS QRIDPMIGMDGITPQMFMTKEN >Mature_822_residues MDTREETVTGRVKSIFFQNPTNFFKILLIEISATTITWTESDIVVTGTFGDIKEDATYTFTGHVVDHPKYGQQFQADNYH ADQPTNKSGLVDYLSSDKFPGIGPKTATKIIDHLGMDAIDKILDDPKVLAGLGMTAAKRDMLATNLKSNQGMERVIIGLN DYGFTSNMAGRIYQRYQNDALDVIKHNPYQLINDIDGIGFTRADQIAAKLAIAPTSQLRLGGAVMDTLQRLTDGEGDTYV TLKSLVTQTLDLLERARNVAVSPDAVGQAIVTLAKDNALIAEGDRIFPKRLFDAEWQIGRQLKGLAEADATATEPELAEI EKTLAAVEADTGIAYDATQRKAIVTALQSPIFLLTGGPGTGKTTVTDGIVRTYARLHDLSLDLDQYTTDEPFPIMLAAPT GRAAKRISETTQLPASTIHRLLGLGVDTQEFAPNELPNGLLIIDEMSMVDTYLFRTLLTALHPGMKIVLVGDKDQLPSVG PGQVFADLLRSGVLPQTALTHIHRQDADSSIIPLAHAVNAGKLPDDFTKPQVDRSFLACAPSQVPEVVGQVVQRAAVKQF SIADIQVLAPMYRGTAGIDRLNPLLQNILNPKRSARTKAIQFGETEYRIGDKVLQLVNDPNQNVFNGEIGQIVGITLGKE AESKTDELTIDFDGNEITCKRSDFNKITLAYATSIHKAQGSEFPMVILPLTLQSRRMLRRNLLYTAITRAKSFLILVGEL AAFQEAVSEVAVNRHTGLVDRLMTVFGKTVAPQVADDSATKDISASPSEPQIDTTALDLDNEVKQQPPAAHQLTPALVAS QRIDPMIGMDGITPQMFMTKEN
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789182, Length=429, Percent_Identity=27.7389277389277, Blast_Score=107, Evalue=5e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006345 [H]
Pfam domain/function: NA
EC number: 3.1.11.5
Molecular weight: Translated: 89573; Mature: 89573
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTREETVTGRVKSIFFQNPTNFFKILLIEISATTITWTESDIVVTGTFGDIKEDATYTF CCCCHHHHHHHHHHHEECCCCCEEEEEEEEEEEEEEEEECCCEEEEECCCCCCCCCEEEE TGHVVDHPKYGQQFQADNYHADQPTNKSGLVDYLSSDKFPGIGPKTATKIIDHLGMDAID EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHH KILDDPKVLAGLGMTAAKRDMLATNLKSNQGMERVIIGLNDYGFTSNMAGRIYQRYQNDA HHHCCCHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCH LDVIKHNPYQLINDIDGIGFTRADQIAAKLAIAPTSQLRLGGAVMDTLQRLTDGEGDTYV HHHHCCCCHHHHHCCCCCCCCHHHHHHHHHEECCCHHHHCCHHHHHHHHHHHCCCCCEEE TLKSLVTQTLDLLERARNVAVSPDAVGQAIVTLAKDNALIAEGDRIFPKRLFDAEWQIGR EHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEECCCEEEECCCCCCHHHHHCCHHHHHH QLKGLAEADATATEPELAEIEKTLAAVEADTGIAYDATQRKAIVTALQSPIFLLTGGPGT HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCEEEEECCCCC GKTTVTDGIVRTYARLHDLSLDLDQYTTDEPFPIMLAAPTGRAAKRISETTQLPASTIHR CCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHH LLGLGVDTQEFAPNELPNGLLIIDEMSMVDTYLFRTLLTALHPGMKIVLVGDKDQLPSVG HHHCCCCHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC PGQVFADLLRSGVLPQTALTHIHRQDADSSIIPLAHAVNAGKLPDDFTKPQVDRSFLACA CHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHCCCCCCCCCCCCCCCCCHHHHCC PSQVPEVVGQVVQRAAVKQFSIADIQVLAPMYRGTAGIDRLNPLLQNILNPKRSARTKAI CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHE QFGETEYRIGDKVLQLVNDPNQNVFNGEIGQIVGITLGKEAESKTDELTIDFDGNEITCK ECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCEEEEE RSDFNKITLAYATSIHKAQGSEFPMVILPLTLQSRRMLRRNLLYTAITRAKSFLILVGEL CCCCCEEEEEEEHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAFQEAVSEVAVNRHTGLVDRLMTVFGKTVAPQVADDSATKDISASPSEPQIDTTALDLD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC NEVKQQPPAAHQLTPALVASQRIDPMIGMDGITPQMFMTKEN HHHHHCCCCHHHCCHHHHHHHCCCCCCCCCCCCCCEEEECCC >Mature Secondary Structure MDTREETVTGRVKSIFFQNPTNFFKILLIEISATTITWTESDIVVTGTFGDIKEDATYTF CCCCHHHHHHHHHHHEECCCCCEEEEEEEEEEEEEEEEECCCEEEEECCCCCCCCCEEEE TGHVVDHPKYGQQFQADNYHADQPTNKSGLVDYLSSDKFPGIGPKTATKIIDHLGMDAID EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHH KILDDPKVLAGLGMTAAKRDMLATNLKSNQGMERVIIGLNDYGFTSNMAGRIYQRYQNDA HHHCCCHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCH LDVIKHNPYQLINDIDGIGFTRADQIAAKLAIAPTSQLRLGGAVMDTLQRLTDGEGDTYV HHHHCCCCHHHHHCCCCCCCCHHHHHHHHHEECCCHHHHCCHHHHHHHHHHHCCCCCEEE TLKSLVTQTLDLLERARNVAVSPDAVGQAIVTLAKDNALIAEGDRIFPKRLFDAEWQIGR EHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEECCCEEEECCCCCCHHHHHCCHHHHHH QLKGLAEADATATEPELAEIEKTLAAVEADTGIAYDATQRKAIVTALQSPIFLLTGGPGT HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCEEEEECCCCC GKTTVTDGIVRTYARLHDLSLDLDQYTTDEPFPIMLAAPTGRAAKRISETTQLPASTIHR CCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHH LLGLGVDTQEFAPNELPNGLLIIDEMSMVDTYLFRTLLTALHPGMKIVLVGDKDQLPSVG HHHCCCCHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC PGQVFADLLRSGVLPQTALTHIHRQDADSSIIPLAHAVNAGKLPDDFTKPQVDRSFLACA CHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHCCCCCCCCCCCCCCCCCHHHHCC PSQVPEVVGQVVQRAAVKQFSIADIQVLAPMYRGTAGIDRLNPLLQNILNPKRSARTKAI CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHE QFGETEYRIGDKVLQLVNDPNQNVFNGEIGQIVGITLGKEAESKTDELTIDFDGNEITCK ECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCEEEEE RSDFNKITLAYATSIHKAQGSEFPMVILPLTLQSRRMLRRNLLYTAITRAKSFLILVGEL CCCCCEEEEEEEHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAFQEAVSEVAVNRHTGLVDRLMTVFGKTVAPQVADDSATKDISASPSEPQIDTTALDLD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC NEVKQQPPAAHQLTPALVASQRIDPMIGMDGITPQMFMTKEN HHHHHCCCCHHHCCHHHHHHHCCCCCCCCCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]