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The map label for this gene is rex [H]

Identifier: 116494742

GI number: 116494742

Start: 1227904

End: 1228557

Strand: Direct

Name: rex [H]

Synonym: LSEI_1250

Alternate gene names: 116494742

Gene position: 1227904-1228557 (Clockwise)

Preceding gene: 116494741

Following gene: 116494743

Centisome position: 42.41

GC content: 49.24

Gene sequence:

>654_bases
GTGGTAGTCAGCAAGCAGGCGTTATCACAGGCAACAATTAAACGGATTCCCGTGTATTATCGAACGGTTAAAGACTTGCA
GCAGACCGGCGAGAAACGGGTGCGGTCTGATCGATTAAGTAAATTGGTGCACATTGCCCCAGCAACGATTCGACGTGATT
TTTCTAATTTTGGCGATTTAGGCCGAAGTGGCTATGGCTATTCGGTTGACTTGCTTGCACAGGTTTTTGGCGAGTTGCTT
GAAGTCCACTCAGAAGAACAGATGGCGTTGGTGGGTTGTGGTAATCTGGGCCGTGCCTTGCTGACGAATAATTTTCGCCG
CAACCCTGATCTTTCTATCACGATGGGCTTTGACACCGATCCGCAATTAATCGGGACAACGATTGCCGGCGTGCCGATTT
ATGATTTGGCCGCTTTATCTGAAAAATTGCGTCCGAGTATGCACACCGCTATTGTCTGCGTCCCAAGCTCGGCCCAAGCT
GCAGTGGTGCGCCAATTAGAAGCGCAAAACGTCACTGCAATTTTGACCTTTGCTCCCAAACCGGTTCCTGCCAAACCGAC
AACCACGATTCGCTACATTGATCTCACCAGTGAACTGCAAGCCTTATTGTTTGTCGATCATCAAAAGCAGGTTAAACGAG
TGTCGCAAGGGTAG

Upstream 100 bases:

>100_bases
TCATGCCAGTCATTACTTTTTAAAAAAGATAGCCAAGCAAGCCGAATTCTGGTAAGCTAATATGTGAAAAGAGTAACAAA
AGCGTGCGGAGGTGTTCAAA

Downstream 100 bases:

>100_bases
CACAACTGAGCCGTAGCAGGCTATGTTTCCGAAAAGGATAGCGCTAGCGATTGACCCGTCAAAATCAACGGGTTATAATT
CAGCTAATGCAATGATCAAG

Product: redox-sensing transcriptional repressor Rex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MVVSKQALSQATIKRIPVYYRTVKDLQQTGEKRVRSDRLSKLVHIAPATIRRDFSNFGDLGRSGYGYSVDLLAQVFGELL
EVHSEEQMALVGCGNLGRALLTNNFRRNPDLSITMGFDTDPQLIGTTIAGVPIYDLAALSEKLRPSMHTAIVCVPSSAQA
AVVRQLEAQNVTAILTFAPKPVPAKPTTTIRYIDLTSELQALLFVDHQKQVKRVSQG

Sequences:

>Translated_217_residues
MVVSKQALSQATIKRIPVYYRTVKDLQQTGEKRVRSDRLSKLVHIAPATIRRDFSNFGDLGRSGYGYSVDLLAQVFGELL
EVHSEEQMALVGCGNLGRALLTNNFRRNPDLSITMGFDTDPQLIGTTIAGVPIYDLAALSEKLRPSMHTAIVCVPSSAQA
AVVRQLEAQNVTAILTFAPKPVPAKPTTTIRYIDLTSELQALLFVDHQKQVKRVSQG
>Mature_217_residues
MVVSKQALSQATIKRIPVYYRTVKDLQQTGEKRVRSDRLSKLVHIAPATIRRDFSNFGDLGRSGYGYSVDLLAQVFGELL
EVHSEEQMALVGCGNLGRALLTNNFRRNPDLSITMGFDTDPQLIGTTIAGVPIYDLAALSEKLRPSMHTAIVCVPSSAQA
AVVRQLEAQNVTAILTFAPKPVPAKPTTTIRYIDLTSELQALLFVDHQKQVKRVSQG

Specific function: Modulates transcription in response to changes in cellular NADH/NAD(+) redox state [H]

COG id: COG2344

COG function: function code R; AT-rich DNA-binding protein

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory rex family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003781
- InterPro:   IPR016040
- InterPro:   IPR009718
- InterPro:   IPR022876
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02629 CoA_binding; PF06971 Put_DNA-bind_N [H]

EC number: NA

Molecular weight: Translated: 23850; Mature: 23850

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVSKQALSQATIKRIPVYYRTVKDLQQTGEKRVRSDRLSKLVHIAPATIRRDFSNFGDL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRSGYGYSVDLLAQVFGELLEVHSEEQMALVGCGNLGRALLTNNFRRNPDLSITMGFDTD
CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCCCCCEEEECCCCC
PQLIGTTIAGVPIYDLAALSEKLRPSMHTAIVCVPSSAQAAVVRQLEAQNVTAILTFAPK
CHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCEEEEEEECCC
PVPAKPTTTIRYIDLTSELQALLFVDHQKQVKRVSQG
CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVVSKQALSQATIKRIPVYYRTVKDLQQTGEKRVRSDRLSKLVHIAPATIRRDFSNFGDL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRSGYGYSVDLLAQVFGELLEVHSEEQMALVGCGNLGRALLTNNFRRNPDLSITMGFDTD
CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCCCCCEEEECCCCC
PQLIGTTIAGVPIYDLAALSEKLRPSMHTAIVCVPSSAQAAVVRQLEAQNVTAILTFAPK
CHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCEEEEEEECCC
PVPAKPTTTIRYIDLTSELQALLFVDHQKQVKRVSQG
CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11832506 [H]