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The map label for this gene is ydcI [H]

Identifier: 116494733

GI number: 116494733

Start: 1217217

End: 1219394

Strand: Direct

Name: ydcI [H]

Synonym: LSEI_1240

Alternate gene names: 116494733

Gene position: 1217217-1219394 (Clockwise)

Preceding gene: 116494731

Following gene: 116494734

Centisome position: 42.04

GC content: 48.94

Gene sequence:

>2178_bases
TTGATTGAAGAACAAACTGTTCAATTAGTTCAACAAAGTTTAACCGGCATCACCGATCGACAGATCAATACCGTTTTGCA
TTTGATGCAAGAAGGCAACACGGTACCGTTTATCGCGCGTTATCGTAAAGAAATGACAGGCAGCCTTGATGAAGTACAGA
TTCAGGCAATTGAGGAAGCTTATAAACGTGCGACTGCTTTGCAAGATCGTAAAGCGGCCGTCATTAAAAGCATCGTCGAG
CAAGGAGCACTGACTGCCAAGCTGGAACAGCAGATTCAAGCCAGTACCAAACTGCAAGATGTGGAAGATATCTATCTACC
ATACAAGCAGAAGCGCCAGACCAAGGCGATGGTGGCTAAGTCGCGCGGCCTTGAACCATTCGCCAAATGGTTGCTTGCTT
TTCCAAACGGATCTCTTGAGCAGGAAGCCCAGAAGTACGTTGATCCAGCCAAAGAAATTGCCACCGTCCAGGATGTTTTA
GATGGTGCCCACGAAATTTTGGCGGAGACTTTTAGCGAAATGGCTCCGATTCGTAACTGGGTGCGCAATTTTACCATGCG
CACAGGAACCATTAGCGCGACAGTCAAAACGAAGGGCAAAGAACTAGACGAAAAAGGCGTTTATCAGCAATACTACGACT
TCGAGGAAACCGTCAAGAAGATGTCCTCAACGCGTACGTTGGCGATCAATCGTGGGGAAAAAGAGAAAATTCTGACGGTT
AAAGTCAAAGTCGACACTGATGCTGTCCTGCATTACTTCCATTTTAAAATTATCGACAATCGGCCCAGTACGGAAGCAAC
GGCGTTTATTGAGGACGCTTACGAAGATGCATACAAGCGATTTGTTGGGCCAGCGATTGAGCGGGAAGTACGGAATGCGT
TAACAACTGATGCCGAAGAGAAATCCATCAAGGTTTTCGGCCAAAATCTGTACAACTTGCTGATGCAAGCACCAATCAAA
GGCAAGGTAGTGTTAGGTTTTGACCCTGCATACCGCACTGGCTGTAAATTGGCCGTCGTTGATGAAAATGGTAAGTTCTT
GGCCAAGGCCGTGATTTATCCGCATAAACCAGCACCAGAAAAAAAGCGTCAGGAAGCCGCACCAGAACTCATTGCGCTGC
TTGAAAAGTATCAAGTGACGATGATCGCGATCGGTAATGGCACAGCGAGTCGGCAATCCCAGCAATTTGTTGCCGAAACG
TTGAAGCAGATCAAACGTGATGTTTTTTACGTGATCGTGAATGAAGCAGGGGCATCTGTTTACTCTGCGAGCCAAGAAGC
GCGTGATGAATTTCCCGACTTGCATGTGGAACAACGCAGCGCCATCAGCATTGCGCGCCGCCTACAAGATCCGCTCGCCG
AACTCGTCAAAATTGATCCAGAGTCGGTCGGAGTTGGTCAGTATCAACACGACTTGCCAAGCAAAGATCTGTCTAATGAA
GTCGATGTCGTGGTCGAACGCGCTGTGAACCAGGTCGGCGTGAACTTGAACACAGCCAGTTACCAACTGCTGACGCACAT
TTCTGGCCTATCCAAAACCATCGCAACTAATATCGTGCACTACCGCGATGAAAACGGCCGCTACAACAGCCGTGCGGAGT
TGAAAAAGGTGCCACGTTTGGGACCGAAAGCATTTGAGCAATCAGTCGGGTTCCTCCGCATTATCGGCGGTAAAAATCCG
TTAGACAACACCGACATCCATCCTGAAAGTTATCCAGTCGCTAAAAAAGTTCTGGCGGCAGCAGGTGTGACCCCCGCTGA
TTTAGGCGATGCAGCAGCAGTCGCTAAAATTCGCGAGGTACCCATTGCGCCATTGGTAAGTGAAGGGGTTGGTGCTGAAA
CCGCGAAAGATATCATCACCAGCCTGCAAAATCCAGGCCGAGACCTGCGTGACAACATGGCCGCGCCTATTCTGCGACAA
GACGTCTTGACAATGGAAGACTTAAAAGTGGGGATGAAGCTAGAAGGCACCGTCCGCAATGTCGTTGACTTCGGCGCATT
CGTTGACATCGGTGTGAAACACGATGGTCTCGTCCATGTCTCCAAGATGGCGCGCAAATTTGTGCGTGATCCAAAGACCG
TGGTTGCCATTGGTGACATTGTTGAGGTTTGGATTGAGTTGGTTGATTTAGCGCGCGAACGGATTCAGTTGACGATGGTG
GATCCGGCTGTTAGCTAA

Upstream 100 bases:

>100_bases
GTTAGTGAGCGCATGAGGTTTTATATCAGGCAACTGGTTGTTATAATGGTGACTGCTGAATAACTAATTATCTTGACTAG
AAATCGTGAGGAACAACAAC

Downstream 100 bases:

>100_bases
TGCGTAGGGAGAGTGACTGTTAGTTACAAAACCTATTTAAAAAAGAGGCGTTGCTTTTGATGTTGGTTTGAAGCCAAACA
TCAAAAGCAATGCCTCTTTT

Product: transcriptional accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 725; Mature: 725

Protein sequence:

>725_residues
MIEEQTVQLVQQSLTGITDRQINTVLHLMQEGNTVPFIARYRKEMTGSLDEVQIQAIEEAYKRATALQDRKAAVIKSIVE
QGALTAKLEQQIQASTKLQDVEDIYLPYKQKRQTKAMVAKSRGLEPFAKWLLAFPNGSLEQEAQKYVDPAKEIATVQDVL
DGAHEILAETFSEMAPIRNWVRNFTMRTGTISATVKTKGKELDEKGVYQQYYDFEETVKKMSSTRTLAINRGEKEKILTV
KVKVDTDAVLHYFHFKIIDNRPSTEATAFIEDAYEDAYKRFVGPAIEREVRNALTTDAEEKSIKVFGQNLYNLLMQAPIK
GKVVLGFDPAYRTGCKLAVVDENGKFLAKAVIYPHKPAPEKKRQEAAPELIALLEKYQVTMIAIGNGTASRQSQQFVAET
LKQIKRDVFYVIVNEAGASVYSASQEARDEFPDLHVEQRSAISIARRLQDPLAELVKIDPESVGVGQYQHDLPSKDLSNE
VDVVVERAVNQVGVNLNTASYQLLTHISGLSKTIATNIVHYRDENGRYNSRAELKKVPRLGPKAFEQSVGFLRIIGGKNP
LDNTDIHPESYPVAKKVLAAAGVTPADLGDAAAVAKIREVPIAPLVSEGVGAETAKDIITSLQNPGRDLRDNMAAPILRQ
DVLTMEDLKVGMKLEGTVRNVVDFGAFVDIGVKHDGLVHVSKMARKFVRDPKTVVAIGDIVEVWIELVDLARERIQLTMV
DPAVS

Sequences:

>Translated_725_residues
MIEEQTVQLVQQSLTGITDRQINTVLHLMQEGNTVPFIARYRKEMTGSLDEVQIQAIEEAYKRATALQDRKAAVIKSIVE
QGALTAKLEQQIQASTKLQDVEDIYLPYKQKRQTKAMVAKSRGLEPFAKWLLAFPNGSLEQEAQKYVDPAKEIATVQDVL
DGAHEILAETFSEMAPIRNWVRNFTMRTGTISATVKTKGKELDEKGVYQQYYDFEETVKKMSSTRTLAINRGEKEKILTV
KVKVDTDAVLHYFHFKIIDNRPSTEATAFIEDAYEDAYKRFVGPAIEREVRNALTTDAEEKSIKVFGQNLYNLLMQAPIK
GKVVLGFDPAYRTGCKLAVVDENGKFLAKAVIYPHKPAPEKKRQEAAPELIALLEKYQVTMIAIGNGTASRQSQQFVAET
LKQIKRDVFYVIVNEAGASVYSASQEARDEFPDLHVEQRSAISIARRLQDPLAELVKIDPESVGVGQYQHDLPSKDLSNE
VDVVVERAVNQVGVNLNTASYQLLTHISGLSKTIATNIVHYRDENGRYNSRAELKKVPRLGPKAFEQSVGFLRIIGGKNP
LDNTDIHPESYPVAKKVLAAAGVTPADLGDAAAVAKIREVPIAPLVSEGVGAETAKDIITSLQNPGRDLRDNMAAPILRQ
DVLTMEDLKVGMKLEGTVRNVVDFGAFVDIGVKHDGLVHVSKMARKFVRDPKTVVAIGDIVEVWIELVDLARERIQLTMV
DPAVS
>Mature_725_residues
MIEEQTVQLVQQSLTGITDRQINTVLHLMQEGNTVPFIARYRKEMTGSLDEVQIQAIEEAYKRATALQDRKAAVIKSIVE
QGALTAKLEQQIQASTKLQDVEDIYLPYKQKRQTKAMVAKSRGLEPFAKWLLAFPNGSLEQEAQKYVDPAKEIATVQDVL
DGAHEILAETFSEMAPIRNWVRNFTMRTGTISATVKTKGKELDEKGVYQQYYDFEETVKKMSSTRTLAINRGEKEKILTV
KVKVDTDAVLHYFHFKIIDNRPSTEATAFIEDAYEDAYKRFVGPAIEREVRNALTTDAEEKSIKVFGQNLYNLLMQAPIK
GKVVLGFDPAYRTGCKLAVVDENGKFLAKAVIYPHKPAPEKKRQEAAPELIALLEKYQVTMIAIGNGTASRQSQQFVAET
LKQIKRDVFYVIVNEAGASVYSASQEARDEFPDLHVEQRSAISIARRLQDPLAELVKIDPESVGVGQYQHDLPSKDLSNE
VDVVVERAVNQVGVNLNTASYQLLTHISGLSKTIATNIVHYRDENGRYNSRAELKKVPRLGPKAFEQSVGFLRIIGGKNP
LDNTDIHPESYPVAKKVLAAAGVTPADLGDAAAVAKIREVPIAPLVSEGVGAETAKDIITSLQNPGRDLRDNMAAPILRQ
DVLTMEDLKVGMKLEGTVRNVVDFGAFVDIGVKHDGLVHVSKMARKFVRDPKTVVAIGDIVEVWIELVDLARERIQLTMV
DPAVS

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=774, Percent_Identity=33.8501291989664, Blast_Score=410, Evalue=1e-114,
Organism=Homo sapiens, GI27597090, Length=591, Percent_Identity=25.7191201353638, Blast_Score=107, Evalue=4e-23,
Organism=Escherichia coli, GI87082262, Length=712, Percent_Identity=45.0842696629214, Blast_Score=570, Evalue=1e-163,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=40, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=730, Percent_Identity=30.2739726027397, Blast_Score=261, Evalue=1e-69,
Organism=Caenorhabditis elegans, GI17552892, Length=289, Percent_Identity=28.3737024221453, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI62484314, Length=749, Percent_Identity=32.1762349799733, Blast_Score=372, Evalue=1e-103,
Organism=Drosophila melanogaster, GI24640080, Length=440, Percent_Identity=24.7727272727273, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80578; Mature: 80578

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEEQTVQLVQQSLTGITDRQINTVLHLMQEGNTVPFIARYRKEMTGSLDEVQIQAIEEA
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
YKRATALQDRKAAVIKSIVEQGALTAKLEQQIQASTKLQDVEDIYLPYKQKRQTKAMVAK
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SRGLEPFAKWLLAFPNGSLEQEAQKYVDPAKEIATVQDVLDGAHEILAETFSEMAPIRNW
HCCCCHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRNFTMRTGTISATVKTKGKELDEKGVYQQYYDFEETVKKMSSTRTLAINRGEKEKILTV
HHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCEEEEE
KVKVDTDAVLHYFHFKIIDNRPSTEATAFIEDAYEDAYKRFVGPAIEREVRNALTTDAEE
EEEECHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCH
KSIKVFGQNLYNLLMQAPIKGKVVLGFDPAYRTGCKLAVVDENGKFLAKAVIYPHKPAPE
HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCEEEEEECCCCEEEEEEECCCCCCCH
KKRQEAAPELIALLEKYQVTMIAIGNGTASRQSQQFVAETLKQIKRDVFYVIVNEAGASV
HHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCCHH
YSASQEARDEFPDLHVEQRSAISIARRLQDPLAELVKIDPESVGVGQYQHDLPSKDLSNE
HHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCH
VDVVVERAVNQVGVNLNTASYQLLTHISGLSKTIATNIVHYRDENGRYNSRAELKKVPRL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHCCCC
GPKAFEQSVGFLRIIGGKNPLDNTDIHPESYPVAKKVLAAAGVTPADLGDAAAVAKIREV
CHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
PIAPLVSEGVGAETAKDIITSLQNPGRDLRDNMAAPILRQDVLTMEDLKVGMKLEGTVRN
CCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHCCCEECHHHHH
VVDFGAFVDIGVKHDGLVHVSKMARKFVRDPKTVVAIGDIVEVWIELVDLARERIQLTMV
HHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHEEEEEE
DPAVS
CCCCC
>Mature Secondary Structure
MIEEQTVQLVQQSLTGITDRQINTVLHLMQEGNTVPFIARYRKEMTGSLDEVQIQAIEEA
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
YKRATALQDRKAAVIKSIVEQGALTAKLEQQIQASTKLQDVEDIYLPYKQKRQTKAMVAK
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SRGLEPFAKWLLAFPNGSLEQEAQKYVDPAKEIATVQDVLDGAHEILAETFSEMAPIRNW
HCCCCHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRNFTMRTGTISATVKTKGKELDEKGVYQQYYDFEETVKKMSSTRTLAINRGEKEKILTV
HHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCEEEEE
KVKVDTDAVLHYFHFKIIDNRPSTEATAFIEDAYEDAYKRFVGPAIEREVRNALTTDAEE
EEEECHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCH
KSIKVFGQNLYNLLMQAPIKGKVVLGFDPAYRTGCKLAVVDENGKFLAKAVIYPHKPAPE
HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCEEEEEECCCCEEEEEEECCCCCCCH
KKRQEAAPELIALLEKYQVTMIAIGNGTASRQSQQFVAETLKQIKRDVFYVIVNEAGASV
HHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCCHH
YSASQEARDEFPDLHVEQRSAISIARRLQDPLAELVKIDPESVGVGQYQHDLPSKDLSNE
HHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCH
VDVVVERAVNQVGVNLNTASYQLLTHISGLSKTIATNIVHYRDENGRYNSRAELKKVPRL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHCCCC
GPKAFEQSVGFLRIIGGKNPLDNTDIHPESYPVAKKVLAAAGVTPADLGDAAAVAKIREV
CHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
PIAPLVSEGVGAETAKDIITSLQNPGRDLRDNMAAPILRQDVLTMEDLKVGMKLEGTVRN
CCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHCCCEECHHHHH
VVDFGAFVDIGVKHDGLVHVSKMARKFVRDPKTVVAIGDIVEVWIELVDLARERIQLTMV
HHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHEEEEEE
DPAVS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]