| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116494725
Identifier: 116494725
GI number: 116494725
Start: 1207495
End: 1208508
Strand: Direct
Name: 116494725
Synonym: LSEI_1231
Alternate gene names: NA
Gene position: 1207495-1208508 (Clockwise)
Preceding gene: 116494724
Following gene: 116494726
Centisome position: 41.71
GC content: 50.3
Gene sequence:
>1014_bases ATGGCTAACATGACGAATCTTGATCGATTGATCATCAATGAATTGCTCGATCACGGGGTATTCACAACGACGCCGTTGGC AGCCGCGACCCAACAAAGCCGTGCTGCCATCGCTGAGCTTAAAAAGCCGTCTGTGCAGCAACGGATCGGCAATTATTTTA AAAATCTGCTCGGTCTTGCACCGGACAATTTTCAGGAGAACTTATTGTTGTTGGCGGGCACCGCTAAGCTGAATTCAGCG CAGGTGCACGTACTTTTGGCAACGGTAAAAACGGTGATCAATGAGCCTGAATTGCAAGGCAAAGATGAGGATCGCGCAGT TGCAACGCAAAAAATTGTGCGGCAGGTGCACAGTGAAGTGACGGAGCTGGACGAACGCGAAATCTTGCGGTTAATCGACA GCTTGTTTGTGAAGCGGTTTGGCTTGTTCACGCCGGATCGGTTAGAGGAAGACCAGGAGAACACCCCAGCGGAAATTGAC GATTATTGGGAGGTCAGTCCGGACTTTAACGAGTTTGCCCAAAACTTAGTGAATCATTTGGGCCAATCCGCGCCTGCAAA CGACTTGAATGAGCTGCAACAGGTGAATCGAGTGCTGCTGGCCGAGCAGTTTATGAGTCCGAAAACCAACCCGCAAACTT GGCCATTGCTCGTTGCTCATAAAGAGGAGATTGCTGACCAATGGCGCCAAGGCGGCCGGTTTATCTTAGAAGTCGGTGAC CACTATGCCTTGTTATTGGACAATCAGCGGCAACCGAGTGTCGCAAAACCATATTTGGTGGCGCTGACAGTTGCCCATGA GTTGGGTGCCGGCGTGCAGGCAGATGAGCTGACACCGACAATCAAAGCGGCAACTGAAGCCCTTTTTCCTGGGTTCACCA TCCAACCGAGTCAGGTTAAAGCGGCACTAATTGAGAACGATTTGATGAGTGATCAGGACGATTATTGGGTACCGACGCCG ATTGTCGCTCGCTTTTTAGTTGAAACAGATGAACAGTCAGAAGGAGAAACGTGA
Upstream 100 bases:
>100_bases AATAACGAACATACCACCATTGCAGTTGCAGGTCGCCGGTGAAGATTACGCGGTGATGTTGCCGTGCGGTTTCAGTTTTT CGTTTGCCTAGGGGGATTTT
Downstream 100 bases:
>100_bases TTGTGACAGCCCAACTAGTGCCAATTAGTTATCATCTTCGTAATTTTAATAAATACGTCAAGCTGGACATGACAGCCGCC GAAAATGGCAATCTAACCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MANMTNLDRLIINELLDHGVFTTTPLAAATQQSRAAIAELKKPSVQQRIGNYFKNLLGLAPDNFQENLLLLAGTAKLNSA QVHVLLATVKTVINEPELQGKDEDRAVATQKIVRQVHSEVTELDEREILRLIDSLFVKRFGLFTPDRLEEDQENTPAEID DYWEVSPDFNEFAQNLVNHLGQSAPANDLNELQQVNRVLLAEQFMSPKTNPQTWPLLVAHKEEIADQWRQGGRFILEVGD HYALLLDNQRQPSVAKPYLVALTVAHELGAGVQADELTPTIKAATEALFPGFTIQPSQVKAALIENDLMSDQDDYWVPTP IVARFLVETDEQSEGET
Sequences:
>Translated_337_residues MANMTNLDRLIINELLDHGVFTTTPLAAATQQSRAAIAELKKPSVQQRIGNYFKNLLGLAPDNFQENLLLLAGTAKLNSA QVHVLLATVKTVINEPELQGKDEDRAVATQKIVRQVHSEVTELDEREILRLIDSLFVKRFGLFTPDRLEEDQENTPAEID DYWEVSPDFNEFAQNLVNHLGQSAPANDLNELQQVNRVLLAEQFMSPKTNPQTWPLLVAHKEEIADQWRQGGRFILEVGD HYALLLDNQRQPSVAKPYLVALTVAHELGAGVQADELTPTIKAATEALFPGFTIQPSQVKAALIENDLMSDQDDYWVPTP IVARFLVETDEQSEGET >Mature_336_residues ANMTNLDRLIINELLDHGVFTTTPLAAATQQSRAAIAELKKPSVQQRIGNYFKNLLGLAPDNFQENLLLLAGTAKLNSAQ VHVLLATVKTVINEPELQGKDEDRAVATQKIVRQVHSEVTELDEREILRLIDSLFVKRFGLFTPDRLEEDQENTPAEIDD YWEVSPDFNEFAQNLVNHLGQSAPANDLNELQQVNRVLLAEQFMSPKTNPQTWPLLVAHKEEIADQWRQGGRFILEVGDH YALLLDNQRQPSVAKPYLVALTVAHELGAGVQADELTPTIKAATEALFPGFTIQPSQVKAALIENDLMSDQDDYWVPTPI VARFLVETDEQSEGET
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37681; Mature: 37550
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANMTNLDRLIINELLDHGVFTTTPLAAATQQSRAAIAELKKPSVQQRIGNYFKNLLGLA CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC PDNFQENLLLLAGTAKLNSAQVHVLLATVKTVINEPELQGKDEDRAVATQKIVRQVHSEV CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH TELDEREILRLIDSLFVKRFGLFTPDRLEEDQENTPAEIDDYWEVSPDFNEFAQNLVNHL HHCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH GQSAPANDLNELQQVNRVLLAEQFMSPKTNPQTWPLLVAHKEEIADQWRQGGRFILEVGD CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHCCEEEEEECC HYALLLDNQRQPSVAKPYLVALTVAHELGAGVQADELTPTIKAATEALFPGFTIQPSQVK EEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHCCCCCCCHHHHH AALIENDLMSDQDDYWVPTPIVARFLVETDEQSEGET HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure ANMTNLDRLIINELLDHGVFTTTPLAAATQQSRAAIAELKKPSVQQRIGNYFKNLLGLA CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC PDNFQENLLLLAGTAKLNSAQVHVLLATVKTVINEPELQGKDEDRAVATQKIVRQVHSEV CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH TELDEREILRLIDSLFVKRFGLFTPDRLEEDQENTPAEIDDYWEVSPDFNEFAQNLVNHL HHCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH GQSAPANDLNELQQVNRVLLAEQFMSPKTNPQTWPLLVAHKEEIADQWRQGGRFILEVGD CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHCCEEEEEECC HYALLLDNQRQPSVAKPYLVALTVAHELGAGVQADELTPTIKAATEALFPGFTIQPSQVK EEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHCCCCCCCHHHHH AALIENDLMSDQDDYWVPTPIVARFLVETDEQSEGET HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA