| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
Click here to switch to the map view.
The map label for this gene is yfeW [H]
Identifier: 116494649
GI number: 116494649
Start: 1136233
End: 1137240
Strand: Direct
Name: yfeW [H]
Synonym: LSEI_1152
Alternate gene names: 116494649
Gene position: 1136233-1137240 (Clockwise)
Preceding gene: 116494648
Following gene: 116494651
Centisome position: 39.24
GC content: 51.09
Gene sequence:
>1008_bases ATGGATTTTCAAGCAGTGACGGATGAACTGAAGACATGGACAAAAGCCCGGGTAATGCCGGGTTTTAGTGTGGCATTATT GACGGGTAAAACGGTGCAGACGGCGGTTAGTGGCGAGGCACAGTGGTTCCCGCAACCTGCGCCTTTGCAGCCGCATATGC TGTACGACGTGGCATCTTTGACGAAGGTGATAGGAACTACCACGGTGTTCTTGCAAGCATGGGACCAAGGCTTGGTTTCG CCGGATATGCCGCTACACCGATTCTTGCCAGATTTCCCACACACAACCACTTTTCGACAGGCACTCACGCATACTTCAGG ACTGGAAGGCTATATTCCGCACCGTAATGCCTTGCCAGCCCCGGCGCTGAAACAGGCGTTGATGACGCAACTGACTGTTA CCGAAGAAGTGGATCGTCAAGTGGTTTATCGCGACGTGAATTTGTTGCTGGTTGGCTGGGCTTTGGAACAGGTATATCAT CAGCCAATTCAAACACTCATCACGCGGCAAGTGATACAGCCGCTAGCCTTACCGCAAGCTACTTTTCAACCTGATTCACA ACAATGCGTTCCAACAACGTATAGTCCGGCAGTCGGGTTGCGGCAAGGCGTTGTCCATGATCCCAAGAGCGCCATTCTTG GTAAGCATAGCGGTGCAGCTGGCTTATTTGCTTCGTTGGCCGACCTAGTAACTTTCACCGAATACTTTTTTGGCAACCGC CAATCAGCAAGCTGGCCCGCGCATGCGGTTGATCTCACACAGGATTGGACAAAGCATCACTTAGGCCGAAGTCTCGGATG GGACTTGCGGCGCGATGGTCAAGGCCGACTATGGCTTTATCATACTGGCTATACGGGCACTTTTTGGCTGATTCAACCTG ATGATCAATTGGCATTGGTTGTCTTGACCAATCGGGTTCACCCCCAACCAAATCCGGCTTTTTTGGCAAGGCGGGATGCT TTGATAGCCCGATTTTTAAGTGATTTCAAAACAATGCCTGCTGTATAA
Upstream 100 bases:
>100_bases ACAATCAATTTTTGATGATTGCTGGTCCTAATCGCCTAACGCTGTGGTTTCGGGTGGCGTGATTCGTGATAATGGTCAGT ACATCAGAGAGAAGGCCAGC
Downstream 100 bases:
>100_bases CTGATAAAGTTTTGGGACATGATTTATAGTTGCAAAAAAAGACGAGCGATTGTCCGTAGTATTTGGAGTACGGAAAACCG TTCGTCTTTCATTTTGTTAT
Product: Beta-lactamase class C related penicillin binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MDFQAVTDELKTWTKARVMPGFSVALLTGKTVQTAVSGEAQWFPQPAPLQPHMLYDVASLTKVIGTTTVFLQAWDQGLVS PDMPLHRFLPDFPHTTTFRQALTHTSGLEGYIPHRNALPAPALKQALMTQLTVTEEVDRQVVYRDVNLLLVGWALEQVYH QPIQTLITRQVIQPLALPQATFQPDSQQCVPTTYSPAVGLRQGVVHDPKSAILGKHSGAAGLFASLADLVTFTEYFFGNR QSASWPAHAVDLTQDWTKHHLGRSLGWDLRRDGQGRLWLYHTGYTGTFWLIQPDDQLALVVLTNRVHPQPNPAFLARRDA LIARFLSDFKTMPAV
Sequences:
>Translated_335_residues MDFQAVTDELKTWTKARVMPGFSVALLTGKTVQTAVSGEAQWFPQPAPLQPHMLYDVASLTKVIGTTTVFLQAWDQGLVS PDMPLHRFLPDFPHTTTFRQALTHTSGLEGYIPHRNALPAPALKQALMTQLTVTEEVDRQVVYRDVNLLLVGWALEQVYH QPIQTLITRQVIQPLALPQATFQPDSQQCVPTTYSPAVGLRQGVVHDPKSAILGKHSGAAGLFASLADLVTFTEYFFGNR QSASWPAHAVDLTQDWTKHHLGRSLGWDLRRDGQGRLWLYHTGYTGTFWLIQPDDQLALVVLTNRVHPQPNPAFLARRDA LIARFLSDFKTMPAV >Mature_335_residues MDFQAVTDELKTWTKARVMPGFSVALLTGKTVQTAVSGEAQWFPQPAPLQPHMLYDVASLTKVIGTTTVFLQAWDQGLVS PDMPLHRFLPDFPHTTTFRQALTHTSGLEGYIPHRNALPAPALKQALMTQLTVTEEVDRQVVYRDVNLLLVGWALEQVYH QPIQTLITRQVIQPLALPQATFQPDSQQCVPTTYSPAVGLRQGVVHDPKSAILGKHSGAAGLFASLADLVTFTEYFFGNR QSASWPAHAVDLTQDWTKHHLGRSLGWDLRRDGQGRLWLYHTGYTGTFWLIQPDDQLALVVLTNRVHPQPNPAFLARRDA LIARFLSDFKTMPAV
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0214 family [H]
Homologues:
Organism=Escherichia coli, GI87082101, Length=384, Percent_Identity=25, Blast_Score=84, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 - InterPro: IPR022849 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 37405; Mature: 37405
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFQAVTDELKTWTKARVMPGFSVALLTGKTVQTAVSGEAQWFPQPAPLQPHMLYDVASL CCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH TKVIGTTTVFLQAWDQGLVSPDMPLHRFLPDFPHTTTFRQALTHTSGLEGYIPHRNALPA HHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC PALKQALMTQLTVTEEVDRQVVYRDVNLLLVGWALEQVYHQPIQTLITRQVIQPLALPQA HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC TFQPDSQQCVPTTYSPAVGLRQGVVHDPKSAILGKHSGAAGLFASLADLVTFTEYFFGNR CCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC QSASWPAHAVDLTQDWTKHHLGRSLGWDLRRDGQGRLWLYHTGYTGTFWLIQPDDQLALV CCCCCCCCEEHHHHHHHHHHHCHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEE VLTNRVHPQPNPAFLARRDALIARFLSDFKTMPAV EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MDFQAVTDELKTWTKARVMPGFSVALLTGKTVQTAVSGEAQWFPQPAPLQPHMLYDVASL CCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH TKVIGTTTVFLQAWDQGLVSPDMPLHRFLPDFPHTTTFRQALTHTSGLEGYIPHRNALPA HHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC PALKQALMTQLTVTEEVDRQVVYRDVNLLLVGWALEQVYHQPIQTLITRQVIQPLALPQA HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC TFQPDSQQCVPTTYSPAVGLRQGVVHDPKSAILGKHSGAAGLFASLADLVTFTEYFFGNR CCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC QSASWPAHAVDLTQDWTKHHLGRSLGWDLRRDGQGRLWLYHTGYTGTFWLIQPDDQLALV CCCCCCCCEEHHHHHHHHHHHCHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEE VLTNRVHPQPNPAFLARRDALIARFLSDFKTMPAV EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]