| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is agaR [H]
Identifier: 116494539
GI number: 116494539
Start: 1021421
End: 1023712
Strand: Direct
Name: agaR [H]
Synonym: LSEI_1036
Alternate gene names: 116494539
Gene position: 1021421-1023712 (Clockwise)
Preceding gene: 116494538
Following gene: 116494542
Centisome position: 35.28
GC content: 48.43
Gene sequence:
>2292_bases TTGATAGATGTTATAAATAATCAAGCTTTTCATCTTCACAACGATCAAATCAGTTATATTTGCGCTTTGCTGCCGAATGG TCAGCTCGGGCATCTTTATTTTGGTCCGCGCTTGTCATTAACTAAAAACGACTTAGCCTATTTGTCTCAAGGCTCAAGTC CGTTTGCGTGGATGGCCAATTTTTCAGACGATCAGGAATTTGCCTTGGGTGATGCACAACAGGAGTATCCTGTTTACGGC ACTGGTGATTTTCGGCAAGGCAGCCTGAGTGTGACCCAAGATGATATGCCAATTTATCCGAACTTTGTTTTTAAAGATGA TCAATTGACGCATACGAAAACGCGGGACTTGCACCATCCGACGAGTTTCGGCAATCCGGCATTGACCGATGTGCTGACGA TTCATCTTGAAGATAAAACGGCCCAATTGTTGTTAACGTTGCAATATACGATTTTTGCCGACAGTGCGGCAATTGTTCGT TCAGCCACACTAACCAATCAAGGGACAGCACCAGTGATGATTCAACGCATGCTGAGTGGCGTTTTGAACTTGCCGCAAGG ACGGTATGACGTTGTTCATTTATCTGGTAATTGGGCGAAGGAGCGTCATATTCAAACGCAACCGTTAACTCAAGGAACAT TTTCAGTTGAATCGCTCCGTGGTGCTTCCAGTCATGAACAGAATCCTTTTGTGGCCTTACATGCAGCGGGACAGCCGTTT GCAGCAGGCGATACCTATGGGGCGAACTTGATTTATTCGGGCAACTTTCTGGACAGCACCGAGGTCAACGAATGGGATCA GACTCGATTGCTAACTGGCATTCATCCCGCATCGTTTAGTTGGCGGTTGGATCCAAAAACCAGTTTTACCACGCCAGAAA CCGTGTTTAGTTATAGCTCTGGTGGTCTTGCCGGCTTAGCTCAGGCCAATCAACGTTTTGTTGCTCGCCATATTATTGAT CCGCAATGGCGTCAAAAGCAGCGCCCGGTCGTCTTAAACAGCTGGGAAGCGACTTACTTTGATTTGAACGAGAAGAAGTT GCTCAAGTTAGCGGCACTCGGCAAGCAGGTCGGTGTGGACTGCTTTGTGCTGGATGATGGCTGGTTCGGAACGCGCGACA ATGATTTGAGTTCCTTGGGTGATTGGTTTACTAATAAGCATAAATTTCCCGACGGTCTCGGCCATTTTGCTCAGGAAATT CACGCGATGGGCCTGCAGTTTGGCCTTTGGTTTGAACCCGAGATGGTTTCACCGCGATCTCAATTCTTCCAAGCCCATCC GAATTGGGTCGTTCGACCAAAAAAGGGTCGTATCTCGATCACGCGTAATCAATATGTGTTAGACTTCAGCAACCCGGCTG TCGTCAACAATATTTTTGAACAGATGCAAAAGGTCATCACTGAAACCAACTTGGATTATGTGAAGTGGGATCTTAATCGC AGCATTACAGAGGCCTTTTCACCGTATCTCGAAAAGATCGGTCATCCGCAAGGCGAGTTCTTCCATCGTTACGTACAAGG CGTGTACACGCTCTATCAGAAGCTGCTGACGGCATTCCCGCATTTATTGATTGAAGGGTGTGCCGGCGGTGGTGGCCGCT TTGATCTGGGCATTCTGTTCTACAGTCCGCAAATTTGGACCAGTGATGATTCCGATGCGATCGAACGTTTGGCCATTCAA TCAGGCATGGCTTTGGCCTATCCATTGAGCTGTATGAGCAATCATGTGACGGCCGTGCCGAATGAACAGGTTGGTCGATC AACGCCGCTGGTCACGCGGTTTCGGGTGGCGGCCTTTGGGATTCTTGGTTATGAACTGGATCTGACCAAACTTGATGCGC GAACATTGGCTACGATCAAGGCTCAAATTGCCTATTACCACGCCTTACAACCGCTAGTACTGAAAGGCGACTTTAGCCTA TTGTTACCGCGGCAGTCCAATGGGCAGAATCAGGTGGCGTGGTTGCTCAGCGCTCATGATCGCAAGCACCTTGTTCTTGG TTTTTTCCGAGTCTTGGCTGATGCAGACAGTCGCACCGTGCAGTATATGAAGGTGCCATTGGCAAAATCTGACACACCGT ATTGGGTCAATCAGCACACAGGCCCAATTTCGGGGGATGTCCTCCAGCGCGTTGGTGTGCGCTTACCAGTCCAATTCAAC GGCGCCAATCGCGCACAAGCTCAGTTAATCGGTGACTATCAATCGGTACTGTTGACCTTTGATAGTGTGGCAAGTTTGGA TCACATTGAAAGCCAGCAGACCGATGCCGACAAACAAACAGTTGGCCATTAA
Upstream 100 bases:
>100_bases CCTTCATAGTGATCAATTGACAGTGGCGCGCAGGTCCTTCACCAACTTGCTTGTTATGCTATAACGGAAGTAGGAGGTTA TATTTGAAGGAGGCTACGCT
Downstream 100 bases:
>100_bases ATGTGCTGCCAAACAGCTTTGGTTTGACAATGGCTGTTCAGATCAGGAATATGAGTAAAAAAAGCCCGATAAACGAGTTG CAAGTATCAGTTCTTGACTT
Product: Alpha-galactosidase
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 763; Mature: 763
Protein sequence:
>763_residues MIDVINNQAFHLHNDQISYICALLPNGQLGHLYFGPRLSLTKNDLAYLSQGSSPFAWMANFSDDQEFALGDAQQEYPVYG TGDFRQGSLSVTQDDMPIYPNFVFKDDQLTHTKTRDLHHPTSFGNPALTDVLTIHLEDKTAQLLLTLQYTIFADSAAIVR SATLTNQGTAPVMIQRMLSGVLNLPQGRYDVVHLSGNWAKERHIQTQPLTQGTFSVESLRGASSHEQNPFVALHAAGQPF AAGDTYGANLIYSGNFLDSTEVNEWDQTRLLTGIHPASFSWRLDPKTSFTTPETVFSYSSGGLAGLAQANQRFVARHIID PQWRQKQRPVVLNSWEATYFDLNEKKLLKLAALGKQVGVDCFVLDDGWFGTRDNDLSSLGDWFTNKHKFPDGLGHFAQEI HAMGLQFGLWFEPEMVSPRSQFFQAHPNWVVRPKKGRISITRNQYVLDFSNPAVVNNIFEQMQKVITETNLDYVKWDLNR SITEAFSPYLEKIGHPQGEFFHRYVQGVYTLYQKLLTAFPHLLIEGCAGGGGRFDLGILFYSPQIWTSDDSDAIERLAIQ SGMALAYPLSCMSNHVTAVPNEQVGRSTPLVTRFRVAAFGILGYELDLTKLDARTLATIKAQIAYYHALQPLVLKGDFSL LLPRQSNGQNQVAWLLSAHDRKHLVLGFFRVLADADSRTVQYMKVPLAKSDTPYWVNQHTGPISGDVLQRVGVRLPVQFN GANRAQAQLIGDYQSVLLTFDSVASLDHIESQQTDADKQTVGH
Sequences:
>Translated_763_residues MIDVINNQAFHLHNDQISYICALLPNGQLGHLYFGPRLSLTKNDLAYLSQGSSPFAWMANFSDDQEFALGDAQQEYPVYG TGDFRQGSLSVTQDDMPIYPNFVFKDDQLTHTKTRDLHHPTSFGNPALTDVLTIHLEDKTAQLLLTLQYTIFADSAAIVR SATLTNQGTAPVMIQRMLSGVLNLPQGRYDVVHLSGNWAKERHIQTQPLTQGTFSVESLRGASSHEQNPFVALHAAGQPF AAGDTYGANLIYSGNFLDSTEVNEWDQTRLLTGIHPASFSWRLDPKTSFTTPETVFSYSSGGLAGLAQANQRFVARHIID PQWRQKQRPVVLNSWEATYFDLNEKKLLKLAALGKQVGVDCFVLDDGWFGTRDNDLSSLGDWFTNKHKFPDGLGHFAQEI HAMGLQFGLWFEPEMVSPRSQFFQAHPNWVVRPKKGRISITRNQYVLDFSNPAVVNNIFEQMQKVITETNLDYVKWDLNR SITEAFSPYLEKIGHPQGEFFHRYVQGVYTLYQKLLTAFPHLLIEGCAGGGGRFDLGILFYSPQIWTSDDSDAIERLAIQ SGMALAYPLSCMSNHVTAVPNEQVGRSTPLVTRFRVAAFGILGYELDLTKLDARTLATIKAQIAYYHALQPLVLKGDFSL LLPRQSNGQNQVAWLLSAHDRKHLVLGFFRVLADADSRTVQYMKVPLAKSDTPYWVNQHTGPISGDVLQRVGVRLPVQFN GANRAQAQLIGDYQSVLLTFDSVASLDHIESQQTDADKQTVGH >Mature_763_residues MIDVINNQAFHLHNDQISYICALLPNGQLGHLYFGPRLSLTKNDLAYLSQGSSPFAWMANFSDDQEFALGDAQQEYPVYG TGDFRQGSLSVTQDDMPIYPNFVFKDDQLTHTKTRDLHHPTSFGNPALTDVLTIHLEDKTAQLLLTLQYTIFADSAAIVR SATLTNQGTAPVMIQRMLSGVLNLPQGRYDVVHLSGNWAKERHIQTQPLTQGTFSVESLRGASSHEQNPFVALHAAGQPF AAGDTYGANLIYSGNFLDSTEVNEWDQTRLLTGIHPASFSWRLDPKTSFTTPETVFSYSSGGLAGLAQANQRFVARHIID PQWRQKQRPVVLNSWEATYFDLNEKKLLKLAALGKQVGVDCFVLDDGWFGTRDNDLSSLGDWFTNKHKFPDGLGHFAQEI HAMGLQFGLWFEPEMVSPRSQFFQAHPNWVVRPKKGRISITRNQYVLDFSNPAVVNNIFEQMQKVITETNLDYVKWDLNR SITEAFSPYLEKIGHPQGEFFHRYVQGVYTLYQKLLTAFPHLLIEGCAGGGGRFDLGILFYSPQIWTSDDSDAIERLAIQ SGMALAYPLSCMSNHVTAVPNEQVGRSTPLVTRFRVAAFGILGYELDLTKLDARTLATIKAQIAYYHALQPLVLKGDFSL LLPRQSNGQNQVAWLLSAHDRKHLVLGFFRVLADADSRTVQYMKVPLAKSDTPYWVNQHTGPISGDVLQRVGVRLPVQFN GANRAQAQLIGDYQSVLLTFDSVASLDHIESQQTDADKQTVGH
Specific function: Alpha-galactosidase associated with the raffinose operon [H]
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 85379; Mature: 85379
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: PS00512 ALPHA_GALACTOSIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDVINNQAFHLHNDQISYICALLPNGQLGHLYFGPRLSLTKNDLAYLSQGSSPFAWMAN CCEEECCCEEEEECCCEEEEEEECCCCCEEEEEECCEEEECCCCHHHHHCCCCCEEEEEC FSDDQEFALGDAQQEYPVYGTGDFRQGSLSVTQDDMPIYPNFVFKDDQLTHTKTRDLHHP CCCCCCEECCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCC TSFGNPALTDVLTIHLEDKTAQLLLTLQYTIFADSAAIVRSATLTNQGTAPVMIQRMLSG CCCCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCHHHHEEEEECCCCCHHHHHHHHHHH VLNLPQGRYDVVHLSGNWAKERHIQTQPLTQGTFSVESLRGASSHEQNPFVALHAAGQPF HHCCCCCCEEEEEECCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCC AAGDTYGANLIYSGNFLDSTEVNEWDQTRLLTGIHPASFSWRLDPKTSFTTPETVFSYSS CCCCCCCCEEEEECCCCCCCCCCCCHHHHHEECCCCCCEEEEECCCCCCCCCHHHEEECC GGLAGLAQANQRFVARHIIDPQWRQKQRPVVLNSWEATYFDLNEKKLLKLAALGKQVGVD CCCHHHHHHHHHHHHHHHCCCHHHHCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHCCE CFVLDDGWFGTRDNDLSSLGDWFTNKHKFPDGLGHFAQEIHAMGLQFGLWFEPEMVSPRS EEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCEECEEECCCCCCCHH QFFQAHPNWVVRPKKGRISITRNQYVLDFSNPAVVNNIFEQMQKVITETNLDYVKWDLNR HHHHCCCCEEEECCCCCEEEEECEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCH SITEAFSPYLEKIGHPQGEFFHRYVQGVYTLYQKLLTAFPHLLIEGCAGGGGRFDLGILF HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE YSPQIWTSDDSDAIERLAIQSGMALAYPLSCMSNHVTAVPNEQVGRSTPLVTRFRVAAFG ECCEEECCCCHHHHHHHHHHCCCEEEEEHHHHCCCEEECCCHHCCCCCCHHHHHHHHHHE ILGYELDLTKLDARTLATIKAQIAYYHALQPLVLKGDFSLLLPRQSNGQNQVAWLLSAHD EEEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCCEEEEEEECCC RKHLVLGFFRVLADADSRTVQYMKVPLAKSDTPYWVNQHTGPISGDVLQRVGVRLPVQFN CCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEECCCCCCCCHHHHHHCCCEEEEEEC GANRAQAQLIGDYQSVLLTFDSVASLDHIESQQTDADKQTVGH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC >Mature Secondary Structure MIDVINNQAFHLHNDQISYICALLPNGQLGHLYFGPRLSLTKNDLAYLSQGSSPFAWMAN CCEEECCCEEEEECCCEEEEEEECCCCCEEEEEECCEEEECCCCHHHHHCCCCCEEEEEC FSDDQEFALGDAQQEYPVYGTGDFRQGSLSVTQDDMPIYPNFVFKDDQLTHTKTRDLHHP CCCCCCEECCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCC TSFGNPALTDVLTIHLEDKTAQLLLTLQYTIFADSAAIVRSATLTNQGTAPVMIQRMLSG CCCCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCHHHHEEEEECCCCCHHHHHHHHHHH VLNLPQGRYDVVHLSGNWAKERHIQTQPLTQGTFSVESLRGASSHEQNPFVALHAAGQPF HHCCCCCCEEEEEECCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCC AAGDTYGANLIYSGNFLDSTEVNEWDQTRLLTGIHPASFSWRLDPKTSFTTPETVFSYSS CCCCCCCCEEEEECCCCCCCCCCCCHHHHHEECCCCCCEEEEECCCCCCCCCHHHEEECC GGLAGLAQANQRFVARHIIDPQWRQKQRPVVLNSWEATYFDLNEKKLLKLAALGKQVGVD CCCHHHHHHHHHHHHHHHCCCHHHHCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHCCE CFVLDDGWFGTRDNDLSSLGDWFTNKHKFPDGLGHFAQEIHAMGLQFGLWFEPEMVSPRS EEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCEECEEECCCCCCCHH QFFQAHPNWVVRPKKGRISITRNQYVLDFSNPAVVNNIFEQMQKVITETNLDYVKWDLNR HHHHCCCCEEEECCCCCEEEEECEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCH SITEAFSPYLEKIGHPQGEFFHRYVQGVYTLYQKLLTAFPHLLIEGCAGGGGRFDLGILF HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE YSPQIWTSDDSDAIERLAIQSGMALAYPLSCMSNHVTAVPNEQVGRSTPLVTRFRVAAFG ECCEEECCCCHHHHHHHHHHCCCEEEEEHHHHCCCEEECCCHHCCCCCCHHHHHHHHHHE ILGYELDLTKLDARTLATIKAQIAYYHALQPLVLKGDFSLLLPRQSNGQNQVAWLLSAHD EEEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCCEEEEEEECCC RKHLVLGFFRVLADADSRTVQYMKVPLAKSDTPYWVNQHTGPISGDVLQRVGVRLPVQFN CCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEECCCCCCCCHHHHHHCCCEEEEEEC GANRAQAQLIGDYQSVLLTFDSVASLDHIESQQTDADKQTVGH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA