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The map label for this gene is ycjC [C]

Identifier: 116494509

GI number: 116494509

Start: 990482

End: 991021

Strand: Direct

Name: ycjC [C]

Synonym: LSEI_1005

Alternate gene names: 116494509

Gene position: 990482-991021 (Clockwise)

Preceding gene: 116494508

Following gene: 116494510

Centisome position: 34.21

GC content: 44.44

Gene sequence:

>540_bases
ATGGAGATTGGCAGTCGAATTCGAGACTTGCGAATCCGGAAAAACTTGACCCAAGAAGAGTTAGGCGAGCGAACGGATCT
CACAAAGGGCTATATTTCGCAGGTGGAGCATGACCAGAGTTCACCGTCACTTGAGACTTTTTTTGATATTTTGAGTGTTT
TGGGTGAATCTCCGGCTGATTTTTTTCGTGAGGAACCAAAAGATTCCTTGGTTTATCACGAGGATGATCAAGTCACATAT
TTGGATGAAGAAAAAGGGTACCGTTTGAAATGGCTGGTGCCTGAAAGCAATGAAAATGAAATGGAACCGGTCATGATCGA
TTTTGCCGCGCACGGCATTTTTAAAACGTTCGAGCCTTCACCGGCAGAAACCTTTGTTTACGTTGTTAGTGGTCGTGTCA
AATTACTGCTGGGTGAACAAACCTATGTTGCAAAGAAAGGCGAGACAATTTACTTTCACGCAACCAAGCAACATCAATTG
GTCAACGCCGCGACGGGTCGTAGTAAGTGCTTGCTAGTCGCGACGGCATCTTATTTATAA

Upstream 100 bases:

>100_bases
TTACAAATCAAATACTTGCGTTGTTGGTTGGCACTCGTATAATAGGCAGAGCTAGTAAACTTAAAGTTTAGTTTAACGAA
GCCCACAAAGGCGGTGTCTT

Downstream 100 bases:

>100_bases
GGAGTTGGGGTCATTGAGCAACATTATCGTTGAACTGAAGCATGTTGGTAAGCGGTACGGCGACACGCAGGTGCTGAAGG
ATATCAACATTGAGATCGAA

Product: double-stranded beta-helix-like protein

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; Transcriptional Regulator Cro/CI Family; Cupin 2 Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Transcription Regulator; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; Helix-Turn-Helix Transcriptional Regulator PuuR; HTH-Type Transcriptional Regulator; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Domain Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Cro/CI Family Protein; Helix-Turn-Helix Protein; Transcriptional Regulator Protein; Transcriptional Regulator Xre Family; Cupin/Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MEIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGESPADFFREEPKDSLVYHEDDQVTY
LDEEKGYRLKWLVPESNENEMEPVMIDFAAHGIFKTFEPSPAETFVYVVSGRVKLLLGEQTYVAKKGETIYFHATKQHQL
VNAATGRSKCLLVATASYL

Sequences:

>Translated_179_residues
MEIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGESPADFFREEPKDSLVYHEDDQVTY
LDEEKGYRLKWLVPESNENEMEPVMIDFAAHGIFKTFEPSPAETFVYVVSGRVKLLLGEQTYVAKKGETIYFHATKQHQL
VNAATGRSKCLLVATASYL
>Mature_179_residues
MEIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGESPADFFREEPKDSLVYHEDDQVTY
LDEEKGYRLKWLVPESNENEMEPVMIDFAAHGIFKTFEPSPAETFVYVVSGRVKLLLGEQTYVAKKGETIYFHATKQHQL
VNAATGRSKCLLVATASYL

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20456; Mature: 20456

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGESPAD
CCCHHHHHHHHHHHCCCHHHHCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHH
FFREEPKDSLVYHEDDQVTYLDEEKGYRLKWLVPESNENEMEPVMIDFAAHGIFKTFEPS
HHHCCCCCCCEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEHHCCCEECCCCC
PAETFVYVVSGRVKLLLGEQTYVAKKGETIYFHATKQHQLVNAATGRSKCLLVATASYL
CCCEEEEEECCEEEEEECCCEEEECCCCEEEEEECCCCEEEECCCCCCCEEEEEEECCC
>Mature Secondary Structure
MEIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGESPAD
CCCHHHHHHHHHHHCCCHHHHCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHH
FFREEPKDSLVYHEDDQVTYLDEEKGYRLKWLVPESNENEMEPVMIDFAAHGIFKTFEPS
HHHCCCCCCCEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEHHCCCEECCCCC
PAETFVYVVSGRVKLLLGEQTYVAKKGETIYFHATKQHQLVNAATGRSKCLLVATASYL
CCCEEEEEECCEEEEEECCCEEEECCCCEEEEEECCCCEEEECCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA