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The map label for this gene is strH [H]

Identifier: 116493859

GI number: 116493859

Start: 292974

End: 294683

Strand: Direct

Name: strH [H]

Synonym: LSEI_0291

Alternate gene names: 116493859

Gene position: 292974-294683 (Clockwise)

Preceding gene: 116493858

Following gene: 116493860

Centisome position: 10.12

GC content: 48.65

Gene sequence:

>1710_bases
TTGAAGAAGCACGGGTTTCGATTTTGGTTACTGGCGATTGTTGGACTGCTGGGTATGGTGTTGAGTCTGAGTCAGCCGCC
CAAGCAGGTAGCTGCTGCTGATAACACCTTGAAAAGCGTTTTTTCGATTGATGCGGGACGAAAGTATTTTTCCGCGGATC
AGTTGAAAACGATCATTGATCGGGCACATACAGACGGTTACACCGATGTGCAGGTTTTATTGGGCAACGATGCATTGCGA
TTGCTACTTGATGACATGAGCGTGACGATCAATGGCAAAACATATGGCAGTGATGTCGTGAAACAGGCCATACAGGCTGG
TAACAAAGCGTACTACGATGATCCAAACGGGAATGCGTTGACGCAAGCCGACATGGATGCGGTCTTGAAATATGCAGCGG
CACGGGATATCAATATCATTCCGGTTATCAATAGTCCCGGCCATATGGATGCCATTTTGACGGCGATGGCGCAACTAGGC
ATTAAGAATCCTGCCTTTAATGGGTCTAAACGGACTGTCGATCTTAACAATGACACTGCCATTGCCTTCACAAAAGCACT
ATTGCAGAAGTATGTGATGTATTTCAAGGGTCATGCTACGACCTTCAACTTTGGCAGTGACGAGTATGCAAATGATGTCG
ATACTGGTGGCTGGGCCAAGTTGCAACAAAGTGGCACCTACAAAAAGTTTGTGGCATACGTCAACGACTTAGCGGCGATG
GCCAAAAATGCCGGCCTGAAGCCGATGGTTTTCAATGACGGGATTTATTATGACAATAACACCAGTTTCGGGACTTTTGA
CAAGGATTTGATCGTCTCTTATTGGACAGCTGGCTGGGGCGGGTATGATGTCGCAAAGCCAGAATTTTTGACCGATAAGG
GTTTGAAAATCATGAATACCAATGACGGTTGGTATTGGGTTTTAGGTCGCGTGGACGGCGATCTCTATAGTTACAAAACG
GCGCTAGCTAGTTTAGCAAGTAAAAAATTCACTGATGTACCAGGCGCTTCGAGTGCCGTGCCGATTATTGGCAGTGTGCA
GGCGGTTTGGGCGGATGATCCGAGTGCGCAGTTAGACATGCCGGCGCTGTTGAAGTTGATGGATCAATTTTCGACAGCCT
ATGCACCTTACTTAGTTCGCCCAGCCGATTACAGTAAAGTTGATGCCGCTATCGCTGCCGTGCCACGGCAACTTAATCAG
TACACCGAAGCATCAGTTGCTAAACTTGATGCAGCGTTAAATGCTGTTGTCCGCGGTAAAAAGGCAACCGATCAGGCATT
GGTTGACGGCTATGCCCAGACCATTACTGTCGCCATCAAGGCACTGCAATTGCGGCCGGCCGATTACACAAAGGTTGATG
CCGCCATTGCAGCTGCAAAGAAACTTGACCGGTCACACTATCAAGACCTTAGTGCCGTTGATGCGGCGCTTGCTGCTGTT
AATCGTAATCTCAACATCACCCAGCAAGCCCAAGTTGATACCATGGCTGCCAAGATTACAGCTGCCATCGCTGCGTTGGT
TCTGAAGCCGGTGCCGCAACCCGATCCAAGGCAGCAGCAAGTGCCAACAAAAACCATTGTGAATCCAGACCGGTACTTAC
CAAAAACGGCAGAAGCTTCCGGGTGGGAATTGATGCTAGCTGGGCTTGCCACGATTTTTGGTGTCATTAGCATTGTTTTC
TTTTGGCGGCAACATCGCATGGCCATCTAA

Upstream 100 bases:

>100_bases
AAATCATTTTGAATTGAAAGCGATTCCAGCATATTCTTAACTTGTTGGTGGAATAGGCCAATCTTGTTGCAGAAACCATC
CACAAAAGGAGGTTGAAGTT

Downstream 100 bases:

>100_bases
TTCCTGACAATAACTGAAAATACGGCCCGCTACGCATCTTTTGCGCAACGGGCCGTTATGGTGTTGTGCGCCAACACCAT
TTCATAGTGTCACGCAAGGA

Product: lacto-N-biosidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 569; Mature: 569

Protein sequence:

>569_residues
MKKHGFRFWLLAIVGLLGMVLSLSQPPKQVAAADNTLKSVFSIDAGRKYFSADQLKTIIDRAHTDGYTDVQVLLGNDALR
LLLDDMSVTINGKTYGSDVVKQAIQAGNKAYYDDPNGNALTQADMDAVLKYAAARDINIIPVINSPGHMDAILTAMAQLG
IKNPAFNGSKRTVDLNNDTAIAFTKALLQKYVMYFKGHATTFNFGSDEYANDVDTGGWAKLQQSGTYKKFVAYVNDLAAM
AKNAGLKPMVFNDGIYYDNNTSFGTFDKDLIVSYWTAGWGGYDVAKPEFLTDKGLKIMNTNDGWYWVLGRVDGDLYSYKT
ALASLASKKFTDVPGASSAVPIIGSVQAVWADDPSAQLDMPALLKLMDQFSTAYAPYLVRPADYSKVDAAIAAVPRQLNQ
YTEASVAKLDAALNAVVRGKKATDQALVDGYAQTITVAIKALQLRPADYTKVDAAIAAAKKLDRSHYQDLSAVDAALAAV
NRNLNITQQAQVDTMAAKITAAIAALVLKPVPQPDPRQQQVPTKTIVNPDRYLPKTAEASGWELMLAGLATIFGVISIVF
FWRQHRMAI

Sequences:

>Translated_569_residues
MKKHGFRFWLLAIVGLLGMVLSLSQPPKQVAAADNTLKSVFSIDAGRKYFSADQLKTIIDRAHTDGYTDVQVLLGNDALR
LLLDDMSVTINGKTYGSDVVKQAIQAGNKAYYDDPNGNALTQADMDAVLKYAAARDINIIPVINSPGHMDAILTAMAQLG
IKNPAFNGSKRTVDLNNDTAIAFTKALLQKYVMYFKGHATTFNFGSDEYANDVDTGGWAKLQQSGTYKKFVAYVNDLAAM
AKNAGLKPMVFNDGIYYDNNTSFGTFDKDLIVSYWTAGWGGYDVAKPEFLTDKGLKIMNTNDGWYWVLGRVDGDLYSYKT
ALASLASKKFTDVPGASSAVPIIGSVQAVWADDPSAQLDMPALLKLMDQFSTAYAPYLVRPADYSKVDAAIAAVPRQLNQ
YTEASVAKLDAALNAVVRGKKATDQALVDGYAQTITVAIKALQLRPADYTKVDAAIAAAKKLDRSHYQDLSAVDAALAAV
NRNLNITQQAQVDTMAAKITAAIAALVLKPVPQPDPRQQQVPTKTIVNPDRYLPKTAEASGWELMLAGLATIFGVISIVF
FWRQHRMAI
>Mature_569_residues
MKKHGFRFWLLAIVGLLGMVLSLSQPPKQVAAADNTLKSVFSIDAGRKYFSADQLKTIIDRAHTDGYTDVQVLLGNDALR
LLLDDMSVTINGKTYGSDVVKQAIQAGNKAYYDDPNGNALTQADMDAVLKYAAARDINIIPVINSPGHMDAILTAMAQLG
IKNPAFNGSKRTVDLNNDTAIAFTKALLQKYVMYFKGHATTFNFGSDEYANDVDTGGWAKLQQSGTYKKFVAYVNDLAAM
AKNAGLKPMVFNDGIYYDNNTSFGTFDKDLIVSYWTAGWGGYDVAKPEFLTDKGLKIMNTNDGWYWVLGRVDGDLYSYKT
ALASLASKKFTDVPGASSAVPIIGSVQAVWADDPSAQLDMPALLKLMDQFSTAYAPYLVRPADYSKVDAAIAAVPRQLNQ
YTEASVAKLDAALNAVVRGKKATDQALVDGYAQTITVAIKALQLRPADYTKVDAAIAAAKKLDRSHYQDLSAVDAALAAV
NRNLNITQQAQVDTMAAKITAAIAALVLKPVPQPDPRQQQVPTKTIVNPDRYLPKTAEASGWELMLAGLATIFGVISIVF
FWRQHRMAI

Specific function: Unknown

COG id: COG3525

COG function: function code G; N-acetyl-beta-hexosaminidase

Gene ontology:

Cell location: Secreted, cell wall; Peptidoglycan-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 G5 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011098
- InterPro:   IPR001540
- InterPro:   IPR015883
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR005877
- InterPro:   IPR019948
- InterPro:   IPR019931
- InterPro:   IPR001899 [H]

Pfam domain/function: PF07501 G5; PF00728 Glyco_hydro_20; PF00746 Gram_pos_anchor; PF04650 YSIRK_signal [H]

EC number: =3.2.1.52 [H]

Molecular weight: Translated: 61821; Mature: 61821

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHGFRFWLLAIVGLLGMVLSLSQPPKQVAAADNTLKSVFSIDAGRKYFSADQLKTIID
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RAHTDGYTDVQVLLGNDALRLLLDDMSVTINGKTYGSDVVKQAIQAGNKAYYDDPNGNAL
HHCCCCCCEEEEEECCCHHEEEEECCEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCEE
TQADMDAVLKYAAARDINIIPVINSPGHMDAILTAMAQLGIKNPAFNGSKRTVDLNNDTA
CHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCH
IAFTKALLQKYVMYFKGHATTFNFGSDEYANDVDTGGWAKLQQSGTYKKFVAYVNDLAAM
HHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHH
AKNAGLKPMVFNDGIYYDNNTSFGTFDKDLIVSYWTAGWGGYDVAKPEFLTDKGLKIMNT
HHCCCCCCEEECCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEC
NDGWYWVLGRVDGDLYSYKTALASLASKKFTDVPGASSAVPIIGSVQAVWADDPSAQLDM
CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECEEEEECCCCCCCCCH
PALLKLMDQFSTAYAPYLVRPADYSKVDAAIAAVPRQLNQYTEASVAKLDAALNAVVRGK
HHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KATDQALVDGYAQTITVAIKALQLRPADYTKVDAAIAAAKKLDRSHYQDLSAVDAALAAV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRNLNITQQAQVDTMAAKITAAIAALVLKPVPQPDPRQQQVPTKTIVNPDRYLPKTAEAS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCHHCCCCCCCCC
GWELMLAGLATIFGVISIVFFWRQHRMAI
CHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKHGFRFWLLAIVGLLGMVLSLSQPPKQVAAADNTLKSVFSIDAGRKYFSADQLKTIID
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RAHTDGYTDVQVLLGNDALRLLLDDMSVTINGKTYGSDVVKQAIQAGNKAYYDDPNGNAL
HHCCCCCCEEEEEECCCHHEEEEECCEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCEE
TQADMDAVLKYAAARDINIIPVINSPGHMDAILTAMAQLGIKNPAFNGSKRTVDLNNDTA
CHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCH
IAFTKALLQKYVMYFKGHATTFNFGSDEYANDVDTGGWAKLQQSGTYKKFVAYVNDLAAM
HHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHH
AKNAGLKPMVFNDGIYYDNNTSFGTFDKDLIVSYWTAGWGGYDVAKPEFLTDKGLKIMNT
HHCCCCCCEEECCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEC
NDGWYWVLGRVDGDLYSYKTALASLASKKFTDVPGASSAVPIIGSVQAVWADDPSAQLDM
CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECEEEEECCCCCCCCCH
PALLKLMDQFSTAYAPYLVRPADYSKVDAAIAAVPRQLNQYTEASVAKLDAALNAVVRGK
HHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KATDQALVDGYAQTITVAIKALQLRPADYTKVDAAIAAAKKLDRSHYQDLSAVDAALAAV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRNLNITQQAQVDTMAAKITAAIAALVLKPVPQPDPRQQQVPTKTIVNPDRYLPKTAEAS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCHHCCCCCCCCC
GWELMLAGLATIFGVISIVFFWRQHRMAI
CHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7721787; 11463916 [H]