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The map label for this gene is ugpB [H]

Identifier: 116493857

GI number: 116493857

Start: 290605

End: 291894

Strand: Direct

Name: ugpB [H]

Synonym: LSEI_0289

Alternate gene names: 116493857

Gene position: 290605-291894 (Clockwise)

Preceding gene: 116493852

Following gene: 116493858

Centisome position: 10.04

GC content: 44.5

Gene sequence:

>1290_bases
ATGAAAAAGACTAGTTTTTGGCGGCTATTAGGCTTAATGGGTGCTGTTTTGTTGTTACTGACAGCCTGTGGCAAGCAGGG
GACGGCTACGAAATCGTCTTCAAGTGCGCCAGTGAAAATCACCTACTGGCATCGGATGACGGGGACTTATGATAAATCGT
TGAACAAGCTCATCACCAAGTTCAACCAGAGCCAAAAGAAGTATAAAATTGTCGCAACTTCGCAGGGATCATACAACGCG
TTGCAACAGAAAATTATGGCAGCCGGCAAATCAAAAACGTTGCCGACCATGGCGCAGTCACCGTATACGAACATTGGCGA
CTACGTGAAGAACAAGTTGTTATTGCCATTTGATCCAGAAATGTTAAATGGCGCGGATAAGTTGAGCAATGCTGATTTAA
AAGATATTTATCCAAGCTTTTTGTCTGCAGGTAAATATGAGGGCAAGTACTACGGATTGCCATTCTCAGTCTCGACTTCG
GTGTTGTTTTATAACAAGAAGTTGATGTCCCAGTACAATATCAGCATACCGAAAACATGGGCTGATTTTGCAGCCGATCA
GGAGAAACTCAAGGGAACTGATGTCAACGCGATTGAGTTAGATCAAAGTTATGATGTTGCGCTTGAGGGGATGGCATATG
GTGCTGGCAGTCAACTAATTACACCGAAACTGAAGGCTAATTTGAATGCACCGAAGACATTGGCAGCTGTGAATCAAATT
CTGGATCTGCGCAAGAGCGGTGCGTTGAAAACTGCTGGCGAAGATCAATACTTCAGTGTGCCATTTGCAAATGGAAAAGC
GGTCTTTGGGATTGGTTCTTCGGCAACCGTGCCGGTTCTTATCCAACAGGCCCCAAAGGATCTTGACTGGGGTACTGCTG
TGATTCCGACATACGAAGGCAAACGCAGCAATCCACTGAACGGAAATTACAATGTTTTGTTTAAAGGGGCCTCTAAAGCG
CAACAAGCAGGCGCTTGGGCGTTCCAGAAATTCTTGCTGAAGTCTGAAAATGCATCACAGTGGGCGATGGATTCTGGCTA
TGTGCCGGTGACAAAAACGGCATCTAACAGCACGACATTTAAGAATTATCTACAAAAGAACGACAAGTATAAAGCCGCGG
TCTCTGCAGTTTCACAGAGTTTTGCCTCAACTGTCTTTACCGGTTACACCGATTATCGTAACGATTTGATGAGCACTGTC
GACAGCACGCTGACCAAGAATGTCAGCGGCGAAACAGCGTTTAACAATTTGCAAAAGCAGACTGAAACTATTTTAAAAGA
AAATAAATAA

Upstream 100 bases:

>100_bases
AAATATAAGAGGCATAATAAGGGTGTCAAGACATGACAAATACGGCGGCTTGCAAACACTGTCGATCGGTAAGCCGCGAC
ACTGAATGAGGGACATAGAA

Downstream 100 bases:

>100_bases
CTTTATTTAAAAAAAGACTAGAAGGCGAGCGTTGCTTGCCTTGATGGTCTTTTTTAGTTTGCGTCTGCTTGCTGTGGTGG
GCTATGATGGTCTGAGCAGT

Product: ABC-type sugar transport system, periplasmic component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MKKTSFWRLLGLMGAVLLLLTACGKQGTATKSSSSAPVKITYWHRMTGTYDKSLNKLITKFNQSQKKYKIVATSQGSYNA
LQQKIMAAGKSKTLPTMAQSPYTNIGDYVKNKLLLPFDPEMLNGADKLSNADLKDIYPSFLSAGKYEGKYYGLPFSVSTS
VLFYNKKLMSQYNISIPKTWADFAADQEKLKGTDVNAIELDQSYDVALEGMAYGAGSQLITPKLKANLNAPKTLAAVNQI
LDLRKSGALKTAGEDQYFSVPFANGKAVFGIGSSATVPVLIQQAPKDLDWGTAVIPTYEGKRSNPLNGNYNVLFKGASKA
QQAGAWAFQKFLLKSENASQWAMDSGYVPVTKTASNSTTFKNYLQKNDKYKAAVSAVSQSFASTVFTGYTDYRNDLMSTV
DSTLTKNVSGETAFNNLQKQTETILKENK

Sequences:

>Translated_429_residues
MKKTSFWRLLGLMGAVLLLLTACGKQGTATKSSSSAPVKITYWHRMTGTYDKSLNKLITKFNQSQKKYKIVATSQGSYNA
LQQKIMAAGKSKTLPTMAQSPYTNIGDYVKNKLLLPFDPEMLNGADKLSNADLKDIYPSFLSAGKYEGKYYGLPFSVSTS
VLFYNKKLMSQYNISIPKTWADFAADQEKLKGTDVNAIELDQSYDVALEGMAYGAGSQLITPKLKANLNAPKTLAAVNQI
LDLRKSGALKTAGEDQYFSVPFANGKAVFGIGSSATVPVLIQQAPKDLDWGTAVIPTYEGKRSNPLNGNYNVLFKGASKA
QQAGAWAFQKFLLKSENASQWAMDSGYVPVTKTASNSTTFKNYLQKNDKYKAAVSAVSQSFASTVFTGYTDYRNDLMSTV
DSTLTKNVSGETAFNNLQKQTETILKENK
>Mature_429_residues
MKKTSFWRLLGLMGAVLLLLTACGKQGTATKSSSSAPVKITYWHRMTGTYDKSLNKLITKFNQSQKKYKIVATSQGSYNA
LQQKIMAAGKSKTLPTMAQSPYTNIGDYVKNKLLLPFDPEMLNGADKLSNADLKDIYPSFLSAGKYEGKYYGLPFSVSTS
VLFYNKKLMSQYNISIPKTWADFAADQEKLKGTDVNAIELDQSYDVALEGMAYGAGSQLITPKLKANLNAPKTLAAVNQI
LDLRKSGALKTAGEDQYFSVPFANGKAVFGIGSSATVPVLIQQAPKDLDWGTAVIPTYEGKRSNPLNGNYNVLFKGASKA
QQAGAWAFQKFLLKSENASQWAMDSGYVPVTKTASNSTTFKNYLQKNDKYKAAVSAVSQSFASTVFTGYTDYRNDLMSTV
DSTLTKNVSGETAFNNLQKQTETILKENK

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=357, Percent_Identity=23.8095238095238, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46936; Mature: 46936

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTSFWRLLGLMGAVLLLLTACGKQGTATKSSSSAPVKITYWHRMTGTYDKSLNKLITK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
FNQSQKKYKIVATSQGSYNALQQKIMAAGKSKTLPTMAQSPYTNIGDYVKNKLLLPFDPE
HCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHCCCCCCCCHH
MLNGADKLSNADLKDIYPSFLSAGKYEGKYYGLPFSVSTSVLFYNKKLMSQYNISIPKTW
HHCCHHHHCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECHHHHHHHCCCCCCHH
ADFAADQEKLKGTDVNAIELDQSYDVALEGMAYGAGSQLITPKLKANLNAPKTLAAVNQI
HHHHCCHHHHCCCCCCEEEECCCCCEEEECEEECCCCCEECHHHHCCCCCCHHHHHHHHH
LDLRKSGALKTAGEDQYFSVPFANGKAVFGIGSSATVPVLIQQAPKDLDWGTAVIPTYEG
HHHHHCCCCCCCCCCCEEEEECCCCCEEEECCCCCCEEHHEECCCCCCCCCCEEEECCCC
KRSNPLNGNYNVLFKGASKAQQAGAWAFQKFLLKSENASQWAMDSGYVPVTKTASNSTTF
CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHH
KNYLQKNDKYKAAVSAVSQSFASTVFTGYTDYRNDLMSTVDSTLTKNVSGETAFNNLQKQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
TETILKENK
HHHHHHCCC
>Mature Secondary Structure
MKKTSFWRLLGLMGAVLLLLTACGKQGTATKSSSSAPVKITYWHRMTGTYDKSLNKLITK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
FNQSQKKYKIVATSQGSYNALQQKIMAAGKSKTLPTMAQSPYTNIGDYVKNKLLLPFDPE
HCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHCCCCCCCCHH
MLNGADKLSNADLKDIYPSFLSAGKYEGKYYGLPFSVSTSVLFYNKKLMSQYNISIPKTW
HHCCHHHHCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECHHHHHHHCCCCCCHH
ADFAADQEKLKGTDVNAIELDQSYDVALEGMAYGAGSQLITPKLKANLNAPKTLAAVNQI
HHHHCCHHHHCCCCCCEEEECCCCCEEEECEEECCCCCEECHHHHCCCCCCHHHHHHHHH
LDLRKSGALKTAGEDQYFSVPFANGKAVFGIGSSATVPVLIQQAPKDLDWGTAVIPTYEG
HHHHHCCCCCCCCCCCEEEEECCCCCEEEECCCCCCEEHHEECCCCCCCCCCEEEECCCC
KRSNPLNGNYNVLFKGASKAQQAGAWAFQKFLLKSENASQWAMDSGYVPVTKTASNSTTF
CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHH
KNYLQKNDKYKAAVSAVSQSFASTVFTGYTDYRNDLMSTVDSTLTKNVSGETAFNNLQKQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
TETILKENK
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]