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The map label for this gene is deoB [H]

Identifier: 116493847

GI number: 116493847

Start: 279036

End: 280226

Strand: Direct

Name: deoB [H]

Synonym: LSEI_0279

Alternate gene names: 116493847

Gene position: 279036-280226 (Clockwise)

Preceding gene: 116493846

Following gene: 116493848

Centisome position: 9.64

GC content: 47.02

Gene sequence:

>1191_bases
ATGGCATTTGATCGCATTATCACGATTGTGTTGGATTCAATCGGTATTGGTGAAGCACCTGACGCCGCTAAGTATGATGA
CACCGGCGCTGACACACTTGGTCATATTGGTGCCTATTTTGATGGTAAACTGGCTTTGCCAAATTTGCAGGCCATTGGGT
TGGGTAATATTGCTCGACCAACACCAATTGCTGGCGTGACGGCGTTAGGTAGTCCCAGCGGCTATTTTGGCAAAATGGCC
GAAATTTCTGCAGGTAAAGATAGTATGGATGGTCATTGGGAAATGATGGGTTTGCCTGTGACGGAACCTTTAGGCTATTT
TCCCAAAGGTTTTCCGGCTGAGTTGATTAAACAAATTGAGGAGTTTTCCGGCCGTAAAGTTGTTTTGAACAAACCTTATT
CTGGCACAGAAGCGATCAAGGACTATGGTGAGCAACAGCTGAAAACTGGCGATCTGATCGTGTATACCTCAGGTGATTCG
GTGCTTCAAATTGCGGCGCAAACGGATGTCATTCCACTTGAAGAACTTTATCGCATTTGCCGTTACGTTCGCAGCATCAC
AATTGACGCACCATATCGCATTGGTCGGGTGATTGCACGGCCATATGTCGGGACAGACCCCACTACGTTCACGCGGACCA
GTGACCGTCATGATTACACACTTAAGCCAGATAAGCCGACAGATCTTGATCGCCTTCAAGGTGCTGGCATTGCGACTTAT
GGCATTGGGAAAATTAACGATATTTTCTCTGGCCAAGGGCTAGATGACGGTGTTCATACCACTAGTAATGTTGATGGCAT
GGAAAAAACAATTGAAGCAGTCAAATCGGACCGCCGCGGATTTATTTTCACCAATTTAGTGGACTTTGATGCGATGTATG
GCCATCGCCGTAACGCGCAAGGCGACGGGGATGCTTTGATGACTTTCGATCGACAATTGGGCGACTTAATGACAGTGCTA
CGGCATCAGGATCTATTGATGATCACGGCGGACCACGGAAATGACCCAACCTTCCGCGGAACAGACCACACCCGCGAGTA
TGTTCCGTTGCTAGCCTACAGCAAGCAATTGCCGGGTAATGGCGATTTAGGTATTCGTTCGTCATTTTCAGATCTTGGTG
CCACGATTTTAGATAATTTTGGTGTCACAGGTAATCAAGTTGGCCAGTCGTTCTTAAAGCTGCTTAAATAA

Upstream 100 bases:

>100_bases
CACACTTATGCTGAAGCTAAGGCATTGATTGATGCTGGCGCTGATCGTCTTGGTGCCAGTGCAGGGATTCAAATTTTGAA
GGAAGCAGGCGAAGCATAAG

Downstream 100 bases:

>100_bases
ACCCACATTTTGAAGGAGAATCATTGTCATGAGCACACATATTGATGCCCCAAAAGGAGCCATTGCCGACGTCGTCTTAT
TGCCAGGTGATCCATTGCGA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MAFDRIITIVLDSIGIGEAPDAAKYDDTGADTLGHIGAYFDGKLALPNLQAIGLGNIARPTPIAGVTALGSPSGYFGKMA
EISAGKDSMDGHWEMMGLPVTEPLGYFPKGFPAELIKQIEEFSGRKVVLNKPYSGTEAIKDYGEQQLKTGDLIVYTSGDS
VLQIAAQTDVIPLEELYRICRYVRSITIDAPYRIGRVIARPYVGTDPTTFTRTSDRHDYTLKPDKPTDLDRLQGAGIATY
GIGKINDIFSGQGLDDGVHTTSNVDGMEKTIEAVKSDRRGFIFTNLVDFDAMYGHRRNAQGDGDALMTFDRQLGDLMTVL
RHQDLLMITADHGNDPTFRGTDHTREYVPLLAYSKQLPGNGDLGIRSSFSDLGATILDNFGVTGNQVGQSFLKLLK

Sequences:

>Translated_396_residues
MAFDRIITIVLDSIGIGEAPDAAKYDDTGADTLGHIGAYFDGKLALPNLQAIGLGNIARPTPIAGVTALGSPSGYFGKMA
EISAGKDSMDGHWEMMGLPVTEPLGYFPKGFPAELIKQIEEFSGRKVVLNKPYSGTEAIKDYGEQQLKTGDLIVYTSGDS
VLQIAAQTDVIPLEELYRICRYVRSITIDAPYRIGRVIARPYVGTDPTTFTRTSDRHDYTLKPDKPTDLDRLQGAGIATY
GIGKINDIFSGQGLDDGVHTTSNVDGMEKTIEAVKSDRRGFIFTNLVDFDAMYGHRRNAQGDGDALMTFDRQLGDLMTVL
RHQDLLMITADHGNDPTFRGTDHTREYVPLLAYSKQLPGNGDLGIRSSFSDLGATILDNFGVTGNQVGQSFLKLLK
>Mature_395_residues
AFDRIITIVLDSIGIGEAPDAAKYDDTGADTLGHIGAYFDGKLALPNLQAIGLGNIARPTPIAGVTALGSPSGYFGKMAE
ISAGKDSMDGHWEMMGLPVTEPLGYFPKGFPAELIKQIEEFSGRKVVLNKPYSGTEAIKDYGEQQLKTGDLIVYTSGDSV
LQIAAQTDVIPLEELYRICRYVRSITIDAPYRIGRVIARPYVGTDPTTFTRTSDRHDYTLKPDKPTDLDRLQGAGIATYG
IGKINDIFSGQGLDDGVHTTSNVDGMEKTIEAVKSDRRGFIFTNLVDFDAMYGHRRNAQGDGDALMTFDRQLGDLMTVLR
HQDLLMITADHGNDPTFRGTDHTREYVPLLAYSKQLPGNGDLGIRSSFSDLGATILDNFGVTGNQVGQSFLKLLK

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=409, Percent_Identity=39.119804400978, Blast_Score=271, Evalue=5e-74,
Organism=Escherichia coli, GI1789781, Length=431, Percent_Identity=28.0742459396752, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 43100; Mature: 42969

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDRIITIVLDSIGIGEAPDAAKYDDTGADTLGHIGAYFDGKLALPNLQAIGLGNIARP
CCHHHEEHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCEECCCCCCCC
TPIAGVTALGSPSGYFGKMAEISAGKDSMDGHWEMMGLPVTEPLGYFPKGFPAELIKQIE
CCCCCEEECCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHH
EFSGRKVVLNKPYSGTEAIKDYGEQQLKTGDLIVYTSGDSVLQIAAQTDVIPLEELYRIC
HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHH
RYVRSITIDAPYRIGRVIARPYVGTDPTTFTRTSDRHDYTLKPDKPTDLDRLQGAGIATY
HHHHHCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCEEECCCCCCCHHHHCCCCEEEE
GIGKINDIFSGQGLDDGVHTTSNVDGMEKTIEAVKSDRRGFIFTNLVDFDAMYGHRRNAQ
CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCC
GDGDALMTFDRQLGDLMTVLRHQDLLMITADHGNDPTFRGTDHTREYVPLLAYSKQLPGN
CCCCEEEHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
GDLGIRSSFSDLGATILDNFGVTGNQVGQSFLKLLK
CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHC
>Mature Secondary Structure 
AFDRIITIVLDSIGIGEAPDAAKYDDTGADTLGHIGAYFDGKLALPNLQAIGLGNIARP
CHHHEEHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCEECCCCCCCC
TPIAGVTALGSPSGYFGKMAEISAGKDSMDGHWEMMGLPVTEPLGYFPKGFPAELIKQIE
CCCCCEEECCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHH
EFSGRKVVLNKPYSGTEAIKDYGEQQLKTGDLIVYTSGDSVLQIAAQTDVIPLEELYRIC
HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHH
RYVRSITIDAPYRIGRVIARPYVGTDPTTFTRTSDRHDYTLKPDKPTDLDRLQGAGIATY
HHHHHCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCEEECCCCCCCHHHHCCCCEEEE
GIGKINDIFSGQGLDDGVHTTSNVDGMEKTIEAVKSDRRGFIFTNLVDFDAMYGHRRNAQ
CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCC
GDGDALMTFDRQLGDLMTVLRHQDLLMITADHGNDPTFRGTDHTREYVPLLAYSKQLPGN
CCCCEEEHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
GDLGIRSSFSDLGATILDNFGVTGNQVGQSFLKLLK
CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA