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The map label for this gene is ydeA [H]

Identifier: 116493838

GI number: 116493838

Start: 271884

End: 272474

Strand: Direct

Name: ydeA [H]

Synonym: LSEI_0270

Alternate gene names: 116493838

Gene position: 271884-272474 (Clockwise)

Preceding gene: 116493837

Following gene: 116493839

Centisome position: 9.39

GC content: 41.96

Gene sequence:

>591_bases
TTGAAAACAGCACTCTTCTTTATGATGGATCAGTATGCGGATTGGGAAGGTAGTTATTTGGCTAGTCAGCTCAATCAAAG
CAAACAGTGGTCGGTTAAAACAGGGTCGGTGGCTGAAACGGTCTCATCGTTGGGTGGTTTCCAAACTCAAATTGATTATC
AAATTGACAATCAATTACCCCAGATTGACTTGCTGGTACTTATAGGCGGCAACGCGTGGTCAACGGAAAATGAGAATCTT
AGAGCGCTAGTTGCTAGTCGATTAAAACATAATCAACCGGTTGCCGCGATTTGTGGTGCTGTCGATTATTTGGCCAGAAA
TGGGTTGTTGACTGGATATCGACATACAGGAAACGCACAATATCTTTGGCGTCAAGACAAAGAATATGTCAATGGTCAAG
ATTTTGTTGCAACCCAAGTAGTGACGGACTGTAATCTTGTGACTGCGAACGGCACTGCTGCTTTGGCTTTTACAAATCAG
GTATTAAAAATGATCGCGTTCTTGCCAAGTGCGGAAGTGGATAAGGCAACTGATTTGTATCAGTTGGGTTTTTATCAGTA
TTGTAAACAGTATGGCAATCCTTTCTTTTAA

Upstream 100 bases:

>100_bases
ATTCTGGAAAGAATCGTTTTAGTAAAAAAGCGTTGCGCTTTGTAAAAGATAAGCGTAGCATTTTGCTCGAACAAACGTTC
TTGAAAGGAAGCTAATGTCT

Downstream 100 bases:

>100_bases
AGGATGAGTTCATCTGTTGCGATTAAAAAAAGGGATGAAACATTTGGATCGCCTATATCAATGTGAACTGACAAATTTCT
GCCTTATTCGGTATCAGCAT

Product: 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MKTALFFMMDQYADWEGSYLASQLNQSKQWSVKTGSVAETVSSLGGFQTQIDYQIDNQLPQIDLLVLIGGNAWSTENENL
RALVASRLKHNQPVAAICGAVDYLARNGLLTGYRHTGNAQYLWRQDKEYVNGQDFVATQVVTDCNLVTANGTAALAFTNQ
VLKMIAFLPSAEVDKATDLYQLGFYQYCKQYGNPFF

Sequences:

>Translated_196_residues
MKTALFFMMDQYADWEGSYLASQLNQSKQWSVKTGSVAETVSSLGGFQTQIDYQIDNQLPQIDLLVLIGGNAWSTENENL
RALVASRLKHNQPVAAICGAVDYLARNGLLTGYRHTGNAQYLWRQDKEYVNGQDFVATQVVTDCNLVTANGTAALAFTNQ
VLKMIAFLPSAEVDKATDLYQLGFYQYCKQYGNPFF
>Mature_196_residues
MKTALFFMMDQYADWEGSYLASQLNQSKQWSVKTGSVAETVSSLGGFQTQIDYQIDNQLPQIDLLVLIGGNAWSTENENL
RALVASRLKHNQPVAAICGAVDYLARNGLLTGYRHTGNAQYLWRQDKEYVNGQDFVATQVVTDCNLVTANGTAALAFTNQ
VLKMIAFLPSAEVDKATDLYQLGFYQYCKQYGNPFF

Specific function: Unknown

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PfpI endopeptidase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 21865; Mature: 21865

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTALFFMMDQYADWEGSYLASQLNQSKQWSVKTGSVAETVSSLGGFQTQIDYQIDNQLP
CCCHHEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCC
QIDLLVLIGGNAWSTENENLRALVASRLKHNQPVAAICGAVDYLARNGLLTGYRHTGNAQ
CEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECEEECCCCE
YLWRQDKEYVNGQDFVATQVVTDCNLVTANGTAALAFTNQVLKMIAFLPSAEVDKATDLY
EEEECCHHHCCCCHHHHHHHHHCCEEEECCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHH
QLGFYQYCKQYGNPFF
HHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKTALFFMMDQYADWEGSYLASQLNQSKQWSVKTGSVAETVSSLGGFQTQIDYQIDNQLP
CCCHHEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCC
QIDLLVLIGGNAWSTENENLRALVASRLKHNQPVAAICGAVDYLARNGLLTGYRHTGNAQ
CEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECEEECCCCE
YLWRQDKEYVNGQDFVATQVVTDCNLVTANGTAALAFTNQVLKMIAFLPSAEVDKATDLY
EEEECCHHHCCCCHHHHHHHHHCCEEEECCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHH
QLGFYQYCKQYGNPFF
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]