Click here to switch to the map view.

The map label for this gene is yfmM [H]

Identifier: 116493827

GI number: 116493827

Start: 256721

End: 258268

Strand: Direct

Name: yfmM [H]

Synonym: LSEI_0256

Alternate gene names: 116493827

Gene position: 256721-258268 (Clockwise)

Preceding gene: 116493824

Following gene: 116493829

Centisome position: 8.87

GC content: 46.12

Gene sequence:

>1548_bases
ATGAGTGTTCTTACCGTAACCGGCCTGTCACAGCGCTTTTTAGACAAAGTGTTGTACCAAGATGCCAGTTTTCAAGTAAA
TATCGAAGACCACCTTGGCGTGATCGGGCAAAATGGGGTCGGCAAGAGTACCCTCATTAAGATTCTGACAGGGGCACAGA
CGCCTGATGCAGGTAAAATCGTCTGGCAGAAGCACTTACATGTTGGCTATTTGGATCAGTATGCGAATCTTGTACCCGGC
CAAACAGTTATTGAATTTTTGCGGACCGCGTTTAGTGATCTCTACCGTAAAGAAGCAAAAATGAATCAGATTTATGCCGA
TTATGCTAATCATCCCGATGACGATTTACTGGCCAAAGCAGGGGAGCTGCAACAAGAGCTTGAAGCGGGCGATTTTTATG
ATCTGGAAACAACGATTCAAACTGTTGCTGAAGGCCTTGGGATTACAGCAATGGGGATGGATCATCCTGTTGAAGCATTG
TCTGGCGGCCAGCGATCGAAGCTAATTTTGGCAAAATTGTTACTTGAAAAGCCGGATATGTTGCTCCTGGACGAACCGAC
AAACTATCTTGATGTGTCGCATATTGCCTGGCTAACGGACTGGCTCCAAAATTTTGAGGGCGCGTTTATCGTGATCTCAC
ATGATTTTGATTTTCTAGAAAATGTAACCAATGCTGTCTTAGATATTGAGTTCGGGCAAATCACAAAATACACCGGAACG
TTAAAACAAGCCATGCGCCAAAAAGAGGCCGATCATGAGACTTATTTGAAGGCTTTTGCCAAGCAGCAAGAGACGATTAA
GAAAACTGAGGCGTTTATTCGGAAGTTTAAGGCAGGCACGCGCGCCACGATGGCTAAAAGCCGTGAAAAGCAGCTGGCGC
GAATGGACAAATTGACGCCTCCTGGGACGCGATCCAAGGCGCATTTGGCGTTTCCGTATGCGCCTGTTAATCGACAAATC
TTGGTGGACGTTAACGATTTGGTTGTCGGCTATGACAAGCCATTATTACAACCAATGAACTTTTCGGTTGCAAAAGATCA
GATCATTGCTTTCGAAGGCTTCAATGGTGTCGGAAAATCGACGTTGTTAAAAACATTGCTCGGCCTTTTACCGGCGATCA
GTGGCAACGTTGAAATAGCCGACAATGTTGTTTTTGGCTACTATGAACAAGAGTTGCACTGGGATCAACCTAAACAAAGC
CCAGTGCAGTATTTGGAGCAACGGTTCCCAGCGCTCACGCAGAAAACCGTTCGACAGGTCTTATCACGCACTGCACTGAC
CAGTGAAGAGGCGAACAATCCTCTGACGATGTTGTCAGGGGGCGAACAGGCTAAGGTCAAGTTGGCTGACCTAATGCTCC
AAACGACTAATATTCTAGTGATGGACGAGCCGACGAATCATTTGGACGACGACACCAAAAACGCTTTGCGTGAAGGCTTG
CAACAATATCCTGGCGCAGTTTTACTAGTTTCCCATGAAGCTGGCTTCTATGATAGTTCCTGGGTTGACACAGTTGTGAA
CGTTGAACAGTTGCAAGTTAAAGCTTAA

Upstream 100 bases:

>100_bases
ACCCGCATGCAAACTGTCACAGCTTGCGAAGTGGTTTCAGCAAACGCTCTAAGCAACCAATCAGCTGTCGTTTTTTATAC
GTTTTAGTATAGGAGGAATC

Downstream 100 bases:

>100_bases
CGTTTCGAAAAAATCGACGGGCATGACCATCAACGGGGCATGACCATCAATGATGTTTATGCTGTTATCTATAAAAAGAC
TTGCTGCTGTATGAACGTCC

Product: ABC transporter ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MSVLTVTGLSQRFLDKVLYQDASFQVNIEDHLGVIGQNGVGKSTLIKILTGAQTPDAGKIVWQKHLHVGYLDQYANLVPG
QTVIEFLRTAFSDLYRKEAKMNQIYADYANHPDDDLLAKAGELQQELEAGDFYDLETTIQTVAEGLGITAMGMDHPVEAL
SGGQRSKLILAKLLLEKPDMLLLDEPTNYLDVSHIAWLTDWLQNFEGAFIVISHDFDFLENVTNAVLDIEFGQITKYTGT
LKQAMRQKEADHETYLKAFAKQQETIKKTEAFIRKFKAGTRATMAKSREKQLARMDKLTPPGTRSKAHLAFPYAPVNRQI
LVDVNDLVVGYDKPLLQPMNFSVAKDQIIAFEGFNGVGKSTLLKTLLGLLPAISGNVEIADNVVFGYYEQELHWDQPKQS
PVQYLEQRFPALTQKTVRQVLSRTALTSEEANNPLTMLSGGEQAKVKLADLMLQTTNILVMDEPTNHLDDDTKNALREGL
QQYPGAVLLVSHEAGFYDSSWVDTVVNVEQLQVKA

Sequences:

>Translated_515_residues
MSVLTVTGLSQRFLDKVLYQDASFQVNIEDHLGVIGQNGVGKSTLIKILTGAQTPDAGKIVWQKHLHVGYLDQYANLVPG
QTVIEFLRTAFSDLYRKEAKMNQIYADYANHPDDDLLAKAGELQQELEAGDFYDLETTIQTVAEGLGITAMGMDHPVEAL
SGGQRSKLILAKLLLEKPDMLLLDEPTNYLDVSHIAWLTDWLQNFEGAFIVISHDFDFLENVTNAVLDIEFGQITKYTGT
LKQAMRQKEADHETYLKAFAKQQETIKKTEAFIRKFKAGTRATMAKSREKQLARMDKLTPPGTRSKAHLAFPYAPVNRQI
LVDVNDLVVGYDKPLLQPMNFSVAKDQIIAFEGFNGVGKSTLLKTLLGLLPAISGNVEIADNVVFGYYEQELHWDQPKQS
PVQYLEQRFPALTQKTVRQVLSRTALTSEEANNPLTMLSGGEQAKVKLADLMLQTTNILVMDEPTNHLDDDTKNALREGL
QQYPGAVLLVSHEAGFYDSSWVDTVVNVEQLQVKA
>Mature_514_residues
SVLTVTGLSQRFLDKVLYQDASFQVNIEDHLGVIGQNGVGKSTLIKILTGAQTPDAGKIVWQKHLHVGYLDQYANLVPGQ
TVIEFLRTAFSDLYRKEAKMNQIYADYANHPDDDLLAKAGELQQELEAGDFYDLETTIQTVAEGLGITAMGMDHPVEALS
GGQRSKLILAKLLLEKPDMLLLDEPTNYLDVSHIAWLTDWLQNFEGAFIVISHDFDFLENVTNAVLDIEFGQITKYTGTL
KQAMRQKEADHETYLKAFAKQQETIKKTEAFIRKFKAGTRATMAKSREKQLARMDKLTPPGTRSKAHLAFPYAPVNRQIL
VDVNDLVVGYDKPLLQPMNFSVAKDQIIAFEGFNGVGKSTLLKTLLGLLPAISGNVEIADNVVFGYYEQELHWDQPKQSP
VQYLEQRFPALTQKTVRQVLSRTALTSEEANNPLTMLSGGEQAKVKLADLMLQTTNILVMDEPTNHLDDDTKNALREGLQ
QYPGAVLLVSHEAGFYDSSWVDTVVNVEQLQVKA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=498, Percent_Identity=30.9236947791165, Blast_Score=219, Evalue=4e-57,
Organism=Homo sapiens, GI27881506, Length=502, Percent_Identity=30.2788844621514, Blast_Score=196, Evalue=5e-50,
Organism=Homo sapiens, GI10947137, Length=502, Percent_Identity=30.2788844621514, Blast_Score=196, Evalue=5e-50,
Organism=Homo sapiens, GI10947135, Length=524, Percent_Identity=26.5267175572519, Blast_Score=162, Evalue=1e-39,
Organism=Homo sapiens, GI69354671, Length=524, Percent_Identity=26.5267175572519, Blast_Score=162, Evalue=1e-39,
Organism=Escherichia coli, GI1789751, Length=501, Percent_Identity=30.1397205588822, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI2367384, Length=482, Percent_Identity=31.7427385892116, Blast_Score=235, Evalue=6e-63,
Organism=Escherichia coli, GI1787041, Length=507, Percent_Identity=30.7692307692308, Blast_Score=232, Evalue=4e-62,
Organism=Escherichia coli, GI1787182, Length=508, Percent_Identity=30.3149606299213, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI48994943, Length=510, Percent_Identity=23.1372549019608, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786975, Length=535, Percent_Identity=23.1775700934579, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788506, Length=522, Percent_Identity=22.6053639846743, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI48994997, Length=244, Percent_Identity=25.8196721311475, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081834, Length=261, Percent_Identity=24.1379310344828, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788225, Length=260, Percent_Identity=21.9230769230769, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788165, Length=178, Percent_Identity=29.2134831460674, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789962, Length=218, Percent_Identity=25.2293577981651, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1786803, Length=209, Percent_Identity=28.2296650717703, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17553372, Length=484, Percent_Identity=31.198347107438, Blast_Score=190, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI17555318, Length=515, Percent_Identity=27.378640776699, Blast_Score=189, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI17559834, Length=507, Percent_Identity=28.2051282051282, Blast_Score=181, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI17558664, Length=247, Percent_Identity=29.5546558704453, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6320874, Length=520, Percent_Identity=30.9615384615385, Blast_Score=205, Evalue=1e-53,
Organism=Saccharomyces cerevisiae, GI6321121, Length=528, Percent_Identity=30.3030303030303, Blast_Score=202, Evalue=8e-53,
Organism=Saccharomyces cerevisiae, GI6323278, Length=400, Percent_Identity=26.75, Blast_Score=117, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6325030, Length=381, Percent_Identity=28.6089238845144, Blast_Score=113, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6324314, Length=405, Percent_Identity=24.4444444444444, Blast_Score=107, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24666836, Length=493, Percent_Identity=30.0202839756592, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI24642252, Length=500, Percent_Identity=28.4, Blast_Score=201, Evalue=1e-51,
Organism=Drosophila melanogaster, GI18859989, Length=500, Percent_Identity=28.4, Blast_Score=201, Evalue=1e-51,
Organism=Drosophila melanogaster, GI24641342, Length=497, Percent_Identity=27.1629778672032, Blast_Score=176, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 57492; Mature: 57361

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLTVTGLSQRFLDKVLYQDASFQVNIEDHLGVIGQNGVGKSTLIKILTGAQTPDAGKI
CCEEEECCHHHHHHHHHHHCCCCEEEEEHHHCCEECCCCCCHHHHHHHHHCCCCCCCCCH
VWQKHLHVGYLDQYANLVPGQTVIEFLRTAFSDLYRKEAKMNQIYADYANHPDDDLLAKA
HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
GELQQELEAGDFYDLETTIQTVAEGLGITAMGMDHPVEALSGGQRSKLILAKLLLEKPDM
HHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHCCCCHHHHHHHHHHHCCCCE
LLLDEPTNYLDVSHIAWLTDWLQNFEGAFIVISHDFDFLENVTNAVLDIEFGQITKYTGT
EEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHEEEEECCHHHHHHHH
LKQAMRQKEADHETYLKAFAKQQETIKKTEAFIRKFKAGTRATMAKSREKQLARMDKLTP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
PGTRSKAHLAFPYAPVNRQILVDVNDLVVGYDKPLLQPMNFSVAKDQIIAFEGFNGVGKS
CCCCCCCEEECCCCCCCCEEEEEEHHEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHH
TLLKTLLGLLPAISGNVEIADNVVFGYYEQELHWDQPKQSPVQYLEQRFPALTQKTVRQV
HHHHHHHHHHHHCCCCEEEECCEEEEEEHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHH
LSRTALTSEEANNPLTMLSGGEQAKVKLADLMLQTTNILVMDEPTNHLDDDTKNALREGL
HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHH
QQYPGAVLLVSHEAGFYDSSWVDTVVNVEQLQVKA
HHCCCEEEEEECCCCCCCCHHHHHHHCHHHHEECC
>Mature Secondary Structure 
SVLTVTGLSQRFLDKVLYQDASFQVNIEDHLGVIGQNGVGKSTLIKILTGAQTPDAGKI
CEEEECCHHHHHHHHHHHCCCCEEEEEHHHCCEECCCCCCHHHHHHHHHCCCCCCCCCH
VWQKHLHVGYLDQYANLVPGQTVIEFLRTAFSDLYRKEAKMNQIYADYANHPDDDLLAKA
HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
GELQQELEAGDFYDLETTIQTVAEGLGITAMGMDHPVEALSGGQRSKLILAKLLLEKPDM
HHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHCCCCHHHHHHHHHHHCCCCE
LLLDEPTNYLDVSHIAWLTDWLQNFEGAFIVISHDFDFLENVTNAVLDIEFGQITKYTGT
EEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHEEEEECCHHHHHHHH
LKQAMRQKEADHETYLKAFAKQQETIKKTEAFIRKFKAGTRATMAKSREKQLARMDKLTP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
PGTRSKAHLAFPYAPVNRQILVDVNDLVVGYDKPLLQPMNFSVAKDQIIAFEGFNGVGKS
CCCCCCCEEECCCCCCCCEEEEEEHHEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHH
TLLKTLLGLLPAISGNVEIADNVVFGYYEQELHWDQPKQSPVQYLEQRFPALTQKTVRQV
HHHHHHHHHHHHCCCCEEEECCEEEEEEHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHH
LSRTALTSEEANNPLTMLSGGEQAKVKLADLMLQTTNILVMDEPTNHLDDDTKNALREGL
HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHH
QQYPGAVLLVSHEAGFYDSSWVDTVVNVEQLQVKA
HHCCCEEEEEECCCCCCCCHHHHHHHCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]