Definition Lactobacillus casei ATCC 334, complete genome.
Accession NC_008526
Length 2,895,264

Click here to switch to the map view.

The map label for this gene is 116493766

Identifier: 116493766

GI number: 116493766

Start: 196192

End: 196434

Strand: Direct

Name: 116493766

Synonym: LSEI_0195

Alternate gene names: NA

Gene position: 196192-196434 (Clockwise)

Preceding gene: 116493765

Following gene: 116493767

Centisome position: 6.78

GC content: 46.09

Gene sequence:

>243_bases
ATGAGCGAAGAAATTGTTTTCTTCAACCCCGGCGATGCAGTCGCCAATGATTTTGATTTCGCCGCGGCTCGACGCAGTGC
CCAAATTTACAAAGCCGAACATGTTGTCGATGAAGGCTTGGTTGTCGCTAAAGATAAAGACGGCAAGTATTCCGTTTTTT
ACGAAGCTGCCGGAACGCCTGATTCAAAGGCTAAAGGTGACTATAAAGCAGTTGGCAAGTATACGATTCTGGCTCATCTA
TGA

Upstream 100 bases:

>100_bases
CATTTACCAAAAGCCTGATAGCCAAGGCTGAGGCGCTTCAAGCTGATAAGTGAGACGATGTTGACGTGGTATAATGAAGC
CAGAAAGCGAGGGGATCTTC

Downstream 100 bases:

>100_bases
CGAAAACGGCGTGGTACCGTATTGTCTTGGTGCTCATTGCCGTGGGCTTAATTGGCGTTCTTGATCTTGTCATGACTCAA
AATCAGATCGCCAATCCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MSEEIVFFNPGDAVANDFDFAAARRSAQIYKAEHVVDEGLVVAKDKDGKYSVFYEAAGTPDSKAKGDYKAVGKYTILAHL

Sequences:

>Translated_80_residues
MSEEIVFFNPGDAVANDFDFAAARRSAQIYKAEHVVDEGLVVAKDKDGKYSVFYEAAGTPDSKAKGDYKAVGKYTILAHL
>Mature_79_residues
SEEIVFFNPGDAVANDFDFAAARRSAQIYKAEHVVDEGLVVAKDKDGKYSVFYEAAGTPDSKAKGDYKAVGKYTILAHL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8719; Mature: 8588

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEIVFFNPGDAVANDFDFAAARRSAQIYKAEHVVDEGLVVAKDKDGKYSVFYEAAGTP
CCCCEEEECCCCCCCCCCCCHHHHCCCCEEHHCEECCCCEEEEECCCCCEEEEEEECCCC
DSKAKGDYKAVGKYTILAHL
CCCCCCCEEECCEEEEEEEC
>Mature Secondary Structure 
SEEIVFFNPGDAVANDFDFAAARRSAQIYKAEHVVDEGLVVAKDKDGKYSVFYEAAGTP
CCCEEEECCCCCCCCCCCCHHHHCCCCEEHHCEECCCCEEEEECCCCCEEEEEEECCCC
DSKAKGDYKAVGKYTILAHL
CCCCCCCEEECCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA