Definition Lactobacillus casei ATCC 334, complete genome.
Accession NC_008526
Length 2,895,264

Click here to switch to the map view.

The map label for this gene is 116493750

Identifier: 116493750

GI number: 116493750

Start: 181607

End: 182083

Strand: Direct

Name: 116493750

Synonym: LSEI_0179

Alternate gene names: NA

Gene position: 181607-182083 (Clockwise)

Preceding gene: 116493749

Following gene: 116493751

Centisome position: 6.27

GC content: 45.91

Gene sequence:

>477_bases
ATGAAAAAGTTGCATCGACGTCTCTTGGCTGTTGGGCTTTTGGCAATGATTATGATTTTCGTAGCATTGTTTAGTTGGCG
TTATCAAACACTTAACGCGCCATTGGCCCATCCAGCAGTGAAGACGCGTAGCCTAAGTCTGCCTGCAAAAGTTGTGTTAC
ATCGAAGGACGGTTTCACTTGAAAAAGTGGAAGCAACTATCGTACACGGTCAGTGGCGTGTCCGGCTTCATTTTAGACAA
CCGATCACTAAACAGAATATGAAACATATGAAATTTCAACTGGCCCAACAGCGGGAGGGGCGGGAAGTACCAAATGAACC
ACAAGCCGACTTGAGTCAAGATCAGAAAGTGATCACAATGATGGATGCGTACTATAGTCGGGCGACCGACAATCGGGTTG
TGATCACGACCTTGCCACAAGCGCTAAACTCGCAGAATCTGGTTCAGATCGTGCCATTTGAATCATCGAGAAAATAA

Upstream 100 bases:

>100_bases
TGGTAGCTAGCCACGATTTCATGTGGCTGCAGCTTTTAGCCGATCAGATTTTTGAATTGACAGGCGGCCAACTTAATAAG
CTGGAAGCTGGGCAACCACT

Downstream 100 bases:

>100_bases
GGCAAGAGCATGTTATGTGAGCTGTGTTTAACTGAAAAGAGGTTGATGGTGTTGGTGCAAGAACCGAATGATTTACGCTT
TCAAGTGAATCCACAGGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKKLHRRLLAVGLLAMIMIFVALFSWRYQTLNAPLAHPAVKTRSLSLPAKVVLHRRTVSLEKVEATIVHGQWRVRLHFRQ
PITKQNMKHMKFQLAQQREGREVPNEPQADLSQDQKVITMMDAYYSRATDNRVVITTLPQALNSQNLVQIVPFESSRK

Sequences:

>Translated_158_residues
MKKLHRRLLAVGLLAMIMIFVALFSWRYQTLNAPLAHPAVKTRSLSLPAKVVLHRRTVSLEKVEATIVHGQWRVRLHFRQ
PITKQNMKHMKFQLAQQREGREVPNEPQADLSQDQKVITMMDAYYSRATDNRVVITTLPQALNSQNLVQIVPFESSRK
>Mature_158_residues
MKKLHRRLLAVGLLAMIMIFVALFSWRYQTLNAPLAHPAVKTRSLSLPAKVVLHRRTVSLEKVEATIVHGQWRVRLHFRQ
PITKQNMKHMKFQLAQQREGREVPNEPQADLSQDQKVITMMDAYYSRATDNRVVITTLPQALNSQNLVQIVPFESSRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18293; Mature: 18293

Theoretical pI: Translated: 11.58; Mature: 11.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLHRRLLAVGLLAMIMIFVALFSWRYQTLNAPLAHPAVKTRSLSLPAKVVLHRRTVSL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCH
EKVEATIVHGQWRVRLHFRQPITKQNMKHMKFQLAQQREGREVPNEPQADLSQDQKVITM
HHHHEEEEECEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
MDAYYSRATDNRVVITTLPQALNSQNLVQIVPFESSRK
HHHHHHHCCCCEEEEEECCHHCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MKKLHRRLLAVGLLAMIMIFVALFSWRYQTLNAPLAHPAVKTRSLSLPAKVVLHRRTVSL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCH
EKVEATIVHGQWRVRLHFRQPITKQNMKHMKFQLAQQREGREVPNEPQADLSQDQKVITM
HHHHEEEEECEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
MDAYYSRATDNRVVITTLPQALNSQNLVQIVPFESSRK
HHHHHHHCCCCEEEEEECCHHCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA