Click here to switch to the map view.

The map label for this gene is yybT [H]

Identifier: 116493687

GI number: 116493687

Start: 107812

End: 109818

Strand: Direct

Name: yybT [H]

Synonym: LSEI_0115

Alternate gene names: 116493687

Gene position: 107812-109818 (Clockwise)

Preceding gene: 116493681

Following gene: 116493688

Centisome position: 3.72

GC content: 50.22

Gene sequence:

>2007_bases
ATGAAGAAATTGTTTGAGCGGATTCGTATGCCGGAGTTTCTTGAAGACATGCGAATGCGATATGCAGCTATTGCGATGGT
CGTGCTGGCGGTGATCGGTATTCTGATGGGAGCACTGATCCGTCCGTGGTTGGCTTTGTTGATGCTGCTGATTTTGATTA
GTCTAGTGGCCACGATTTTTTATGCCCTAGAAACCATTGCCAAGAATACCAATCAGTATATTTCGGACCTCAGTTATCGG
ATCAAGCGCGGCGAACAAGAAGCGCTGATCAAAATGCCGATTGGGATCCTGATTTATGACGAGAATCTCAATATTGAATG
GACGAACCCATTCCTGCAGAAGTATTTTGGCGACACTGACGTTCTTGGTCAGCCGTTGGAACATGTTGATGCGGAATTGG
CGGAGTTGATTCGCAGCAACGAGAACACCAATGAAACGAAAATGGTGACTTGGGGTCAGCATCAGTTTGAGATTATCGTG
CAAAAGAGTATCGGGGTTGTCTATCTGATGGACGTGACCCGATATGCTGAGATTGAAGAGCGGGCAGAAGACGAGAAGAT
CGCCATTGGCCAGATCTTCATTGATAACTATGACGAGATCACACAAACCATGGATGATCAGGTCATTACTAATTTAAATA
GTTACGTCACGAATCAGCTGACGGATTGGGCCAATCAATTTGGCATGTTCTTGAAGCGGATTGACAACGATCGCTTTTTC
CTGCTGGCTTATGCCAAGTCGCTGAAGGATGTTGAACGTGACAAGTTCAAGATTCTAGATGTGATTCCGGAAGAAACCTC
GAAACAGAATTATCCATTGACGCTGTCGCTGGGGATCGCATATGGCGATGAAGACTTGGCTCAGTTAGCGGTGACTTCGC
AGAGTAACTTGGATCTGGCGCTTGGCCGTGGCGGCGATCAGGTGGTGGTCCGCGCCAAAGGCCATGAAGCCCGTTTCTAT
GGCGGCAAGACGAATCCAATGGAAAAGCGGACGCGTGTGCGGGCGCGTATGGTTGCGCAGGCCTTGCAAGAATTGTTTAA
GCAGACGGACAAGGTCTTTGTTGTCGGCCATAAGCGGCCAGATATGGATGCAGTTGGCGCCTCGATGGGGATTCGCCGGA
TTGCGCAGATGAATGGCAAAGAGTGTTACATTGTGATTGACCCTGACCATCTGCACTCCGATGTCGAACGCCTCATGGGC
CAAGTGGGTCAAGATCCTGAAGTTGCTAATGCCATTGTGACGCCGGAAGCAGCGCTGTCGCAAGCAACGGATCAGAGCCT
GCTGATCTTGGTCGATCACAGCAAGCCGTCGATCTCAGCGGCGCCTGACTTGTACAAAAGGTTGGCGGCAAGAACAGTTA
TCATCGATCACCATCGACGCGGCGAAGAATTTCCGGACAACCCGATGCTGGTTTATATCGAACCGTACGCCAGCTCCACT
TGTGAGTTGATTGCGGAGATGTTTGAATACCAGCCGACAAATGTGCCAAGTCTTGATAAGCTTGAGGCAACGGCGATGCT
GGCAGGGATCACGGTGGATACCAAGTCCTTTAGCCTACGCACCGGCACGCGGACGTTTGATGCTGCCAGCTATCTGCGTT
CCATGGGCGCTGATGGCATGTTGGCGCAGAACCTGTTAAAGGAAAATATCGACAGCTTCATCCAACGGAATCATTTGATC
GATACAATTGAAATGATTGCGCCAAATATGGCACTATGTACTGGGGAAGAGGATAAGCGTTATGACCCAGTGATTGCAGC
ACAAGCGGCTGATACGATGTTGTCACTCAATGGCGTTGATGCCAGTTTTGTCATCACGAAACGGCCAAGCGGTGATGTCG
GCATTTCCGCCCGCTCGACTGGGGATGTCAACGTGCAGGTCATCATGGAAGCCATGGGCGGCGGCGGTCACTTGAGTAAC
GCAGCCACCCAGATTAAAGGCAAAACGATCGCCGAAGTTCGGACTGATCTGCTTGCTCAGATCAAAAAAGCAGACGAAGA
CGCATAG

Upstream 100 bases:

>100_bases
AGGCAATTACAAGTCGCTCGCAGAATCCAATTGCACAGTATGGTAGAATAGCTAAAGAAATCCTTAAGTATCTGCGCTAA
GTGAAAGCGAGTTTTTCTAT

Downstream 100 bases:

>100_bases
AAAGCAGGGATTTTGATGAAAGTCATCTTTACACAAGACGTTCGTGGCAAGGGCAATCGCGGTCAGGTGAAAGAAGTACC
TGACGGCTATGCTGAAAACT

Product: signal protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 668; Mature: 668

Protein sequence:

>668_residues
MKKLFERIRMPEFLEDMRMRYAAIAMVVLAVIGILMGALIRPWLALLMLLILISLVATIFYALETIAKNTNQYISDLSYR
IKRGEQEALIKMPIGILIYDENLNIEWTNPFLQKYFGDTDVLGQPLEHVDAELAELIRSNENTNETKMVTWGQHQFEIIV
QKSIGVVYLMDVTRYAEIEERAEDEKIAIGQIFIDNYDEITQTMDDQVITNLNSYVTNQLTDWANQFGMFLKRIDNDRFF
LLAYAKSLKDVERDKFKILDVIPEETSKQNYPLTLSLGIAYGDEDLAQLAVTSQSNLDLALGRGGDQVVVRAKGHEARFY
GGKTNPMEKRTRVRARMVAQALQELFKQTDKVFVVGHKRPDMDAVGASMGIRRIAQMNGKECYIVIDPDHLHSDVERLMG
QVGQDPEVANAIVTPEAALSQATDQSLLILVDHSKPSISAAPDLYKRLAARTVIIDHHRRGEEFPDNPMLVYIEPYASST
CELIAEMFEYQPTNVPSLDKLEATAMLAGITVDTKSFSLRTGTRTFDAASYLRSMGADGMLAQNLLKENIDSFIQRNHLI
DTIEMIAPNMALCTGEEDKRYDPVIAAQAADTMLSLNGVDASFVITKRPSGDVGISARSTGDVNVQVIMEAMGGGGHLSN
AATQIKGKTIAEVRTDLLAQIKKADEDA

Sequences:

>Translated_668_residues
MKKLFERIRMPEFLEDMRMRYAAIAMVVLAVIGILMGALIRPWLALLMLLILISLVATIFYALETIAKNTNQYISDLSYR
IKRGEQEALIKMPIGILIYDENLNIEWTNPFLQKYFGDTDVLGQPLEHVDAELAELIRSNENTNETKMVTWGQHQFEIIV
QKSIGVVYLMDVTRYAEIEERAEDEKIAIGQIFIDNYDEITQTMDDQVITNLNSYVTNQLTDWANQFGMFLKRIDNDRFF
LLAYAKSLKDVERDKFKILDVIPEETSKQNYPLTLSLGIAYGDEDLAQLAVTSQSNLDLALGRGGDQVVVRAKGHEARFY
GGKTNPMEKRTRVRARMVAQALQELFKQTDKVFVVGHKRPDMDAVGASMGIRRIAQMNGKECYIVIDPDHLHSDVERLMG
QVGQDPEVANAIVTPEAALSQATDQSLLILVDHSKPSISAAPDLYKRLAARTVIIDHHRRGEEFPDNPMLVYIEPYASST
CELIAEMFEYQPTNVPSLDKLEATAMLAGITVDTKSFSLRTGTRTFDAASYLRSMGADGMLAQNLLKENIDSFIQRNHLI
DTIEMIAPNMALCTGEEDKRYDPVIAAQAADTMLSLNGVDASFVITKRPSGDVGISARSTGDVNVQVIMEAMGGGGHLSN
AATQIKGKTIAEVRTDLLAQIKKADEDA
>Mature_668_residues
MKKLFERIRMPEFLEDMRMRYAAIAMVVLAVIGILMGALIRPWLALLMLLILISLVATIFYALETIAKNTNQYISDLSYR
IKRGEQEALIKMPIGILIYDENLNIEWTNPFLQKYFGDTDVLGQPLEHVDAELAELIRSNENTNETKMVTWGQHQFEIIV
QKSIGVVYLMDVTRYAEIEERAEDEKIAIGQIFIDNYDEITQTMDDQVITNLNSYVTNQLTDWANQFGMFLKRIDNDRFF
LLAYAKSLKDVERDKFKILDVIPEETSKQNYPLTLSLGIAYGDEDLAQLAVTSQSNLDLALGRGGDQVVVRAKGHEARFY
GGKTNPMEKRTRVRARMVAQALQELFKQTDKVFVVGHKRPDMDAVGASMGIRRIAQMNGKECYIVIDPDHLHSDVERLMG
QVGQDPEVANAIVTPEAALSQATDQSLLILVDHSKPSISAAPDLYKRLAARTVIIDHHRRGEEFPDNPMLVYIEPYASST
CELIAEMFEYQPTNVPSLDKLEATAMLAGITVDTKSFSLRTGTRTFDAASYLRSMGADGMLAQNLLKENIDSFIQRNHLI
DTIEMIAPNMALCTGEEDKRYDPVIAAQAADTMLSLNGVDASFVITKRPSGDVGISARSTGDVNVQVIMEAMGGGGHLSN
AATQIKGKTIAEVRTDLLAQIKKADEDA

Specific function: Unknown

COG id: COG3887

COG function: function code T; Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000160
- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR014528 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: NA

Molecular weight: Translated: 74653; Mature: 74653

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLFERIRMPEFLEDMRMRYAAIAMVVLAVIGILMGALIRPWLALLMLLILISLVATIF
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YALETIAKNTNQYISDLSYRIKRGEQEALIKMPIGILIYDENLNIEWTNPFLQKYFGDTD
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHEECCCEEEEEECCCCEEECCHHHHHHCCCHH
VLGQPLEHVDAELAELIRSNENTNETKMVTWGQHQFEIIVQKSIGVVYLMDVTRYAEIEE
HCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCEEEEECHHHHHHHHH
RAEDEKIAIGQIFIDNYDEITQTMDDQVITNLNSYVTNQLTDWANQFGMFLKRIDNDRFF
HCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LLAYAKSLKDVERDKFKILDVIPEETSKQNYPLTLSLGIAYGDEDLAQLAVTSQSNLDLA
EEHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEEEEECCHHHHHHHHCCCCCCEEE
LGRGGDQVVVRAKGHEARFYGGKTNPMEKRTRVRARMVAQALQELFKQTDKVFVVGHKRP
ECCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
DMDAVGASMGIRRIAQMNGKECYIVIDPDHLHSDVERLMGQVGQDPEVANAIVTPEAALS
CHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHEEECCHHHHH
QATDQSLLILVDHSKPSISAAPDLYKRLAARTVIIDHHRRGEEFPDNPMLVYIEPYASST
HCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHEEEECCCCCCCCCCCCEEEEEECCCCCH
CELIAEMFEYQPTNVPSLDKLEATAMLAGITVDTKSFSLRTGTRTFDAASYLRSMGADGM
HHHHHHHHHCCCCCCCCHHHHHHHHHHEEEEEECCCEEEECCCCHHHHHHHHHHCCCCCH
LAQNLLKENIDSFIQRNHLIDTIEMIAPNMALCTGEEDKRYDPVIAAQAADTMLSLNGVD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEHHHHHHHEEECCCC
ASFVITKRPSGDVGISARSTGDVNVQVIMEAMGGGGHLSNAATQIKGKTIAEVRTDLLAQ
EEEEEEECCCCCCCEEECCCCCCCCEEHEECCCCCCCCCCHHHHHCCCHHHHHHHHHHHH
IKKADEDA
HHHCCCCC
>Mature Secondary Structure
MKKLFERIRMPEFLEDMRMRYAAIAMVVLAVIGILMGALIRPWLALLMLLILISLVATIF
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YALETIAKNTNQYISDLSYRIKRGEQEALIKMPIGILIYDENLNIEWTNPFLQKYFGDTD
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHEECCCEEEEEECCCCEEECCHHHHHHCCCHH
VLGQPLEHVDAELAELIRSNENTNETKMVTWGQHQFEIIVQKSIGVVYLMDVTRYAEIEE
HCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCEEEEECHHHHHHHHH
RAEDEKIAIGQIFIDNYDEITQTMDDQVITNLNSYVTNQLTDWANQFGMFLKRIDNDRFF
HCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LLAYAKSLKDVERDKFKILDVIPEETSKQNYPLTLSLGIAYGDEDLAQLAVTSQSNLDLA
EEHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEEEEECCHHHHHHHHCCCCCCEEE
LGRGGDQVVVRAKGHEARFYGGKTNPMEKRTRVRARMVAQALQELFKQTDKVFVVGHKRP
ECCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
DMDAVGASMGIRRIAQMNGKECYIVIDPDHLHSDVERLMGQVGQDPEVANAIVTPEAALS
CHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHEEECCHHHHH
QATDQSLLILVDHSKPSISAAPDLYKRLAARTVIIDHHRRGEEFPDNPMLVYIEPYASST
HCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHEEEECCCCCCCCCCCCEEEEEECCCCCH
CELIAEMFEYQPTNVPSLDKLEATAMLAGITVDTKSFSLRTGTRTFDAASYLRSMGADGM
HHHHHHHHHCCCCCCCCHHHHHHHHHHEEEEEECCCEEEECCCCHHHHHHHHHHCCCCCH
LAQNLLKENIDSFIQRNHLIDTIEMIAPNMALCTGEEDKRYDPVIAAQAADTMLSLNGVD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEHHHHHHHEEECCCC
ASFVITKRPSGDVGISARSTGDVNVQVIMEAMGGGGHLSNAATQIKGKTIAEVRTDLLAQ
EEEEEEECCCCCCCEEECCCCCCCCEEHEECCCCCCCCCCHHHHHCCCHHHHHHHHHHHH
IKKADEDA
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]