Click here to switch to the map view.

The map label for this gene is 116493653

Identifier: 116493653

GI number: 116493653

Start: 78339

End: 78917

Strand: Direct

Name: 116493653

Synonym: LSEI_0081

Alternate gene names: NA

Gene position: 78339-78917 (Clockwise)

Preceding gene: 116493651

Following gene: 116493654

Centisome position: 2.71

GC content: 48.53

Gene sequence:

>579_bases
ATGAACGGTAAACAACGAATGGCGGCGCAGTCTAGACAATGGTTGGTTGATGCCTTGATTGAGTTGATGCAACGCGAAGA
TGTGGCTGATATCTCAATCACGGAAATCGTGCAGACAGCAGATCTTTCACGAAAGACTTTTTATCGGGCATTTAAAACAA
AAGATGACTTAATCGATTATCTCTGTGCCCAATTGACGGATGGTTATTTTGAAAGTTTGCAAAAAGCCACCCGCGATCAG
GAACCGATTAGTTTTGAAACAACCATGGCAAACTTCTTCAACTTCTGGTGGCAGCAAAAAGACCTTGTTCGCTTATTGAT
TCGACAAGGTCTGTTTGATCGTTTGAACGGGGTTTGGCTGCAAGACGCAGTTGCTCACTACCGCGCGTTTCCTGCGCCTT
GGCATGTCGCCGGCACCGATCAGGAAGTGAACTACATCATGGCCTTTGCCCTCGGTGGCTTCACGAATATTCTGCGCGTC
TGGCTGGCGCAAGATGAGCCAGAATCGCCAGAACAGGTGCAAAAGGGGGCGCTGGCTGGTTTTGGACAATTGGCGCGGAG
CATTGGTGGGACGAATTAA

Upstream 100 bases:

>100_bases
AGAGCACTTTGAGTATACTGGGGCTTAGGAGAAGCGGCAATAGGTTGCAGACAAGTGCTACAAATTGGCAGTATTTGTGT
CAGATAAGGGGATGCGAGCG

Downstream 100 bases:

>100_bases
GTACTTAACCAATAGTTTAATAGCTGAACTAATTGCGTATAAGTCTTTGTGGACAGTATGATGGGCATACAAATTAAGCT
AATATGAAAAAACACACAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; AcrR Family Transcriptional Regulator; TetR-Type Transcriptional Regulator; TetR Family Transcriptional Regulator; Transcriptional Regulator AcrR Family

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNGKQRMAAQSRQWLVDALIELMQREDVADISITEIVQTADLSRKTFYRAFKTKDDLIDYLCAQLTDGYFESLQKATRDQ
EPISFETTMANFFNFWWQQKDLVRLLIRQGLFDRLNGVWLQDAVAHYRAFPAPWHVAGTDQEVNYIMAFALGGFTNILRV
WLAQDEPESPEQVQKGALAGFGQLARSIGGTN

Sequences:

>Translated_192_residues
MNGKQRMAAQSRQWLVDALIELMQREDVADISITEIVQTADLSRKTFYRAFKTKDDLIDYLCAQLTDGYFESLQKATRDQ
EPISFETTMANFFNFWWQQKDLVRLLIRQGLFDRLNGVWLQDAVAHYRAFPAPWHVAGTDQEVNYIMAFALGGFTNILRV
WLAQDEPESPEQVQKGALAGFGQLARSIGGTN
>Mature_192_residues
MNGKQRMAAQSRQWLVDALIELMQREDVADISITEIVQTADLSRKTFYRAFKTKDDLIDYLCAQLTDGYFESLQKATRDQ
EPISFETTMANFFNFWWQQKDLVRLLIRQGLFDRLNGVWLQDAVAHYRAFPAPWHVAGTDQEVNYIMAFALGGFTNILRV
WLAQDEPESPEQVQKGALAGFGQLARSIGGTN

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21988; Mature: 21988

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKQRMAAQSRQWLVDALIELMQREDVADISITEIVQTADLSRKTFYRAFKTKDDLIDY
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LCAQLTDGYFESLQKATRDQEPISFETTMANFFNFWWQQKDLVRLLIRQGLFDRLNGVWL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHH
QDAVAHYRAFPAPWHVAGTDQEVNYIMAFALGGFTNILRVWLAQDEPESPEQVQKGALAG
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
FGQLARSIGGTN
HHHHHHHHCCCC
>Mature Secondary Structure
MNGKQRMAAQSRQWLVDALIELMQREDVADISITEIVQTADLSRKTFYRAFKTKDDLIDY
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LCAQLTDGYFESLQKATRDQEPISFETTMANFFNFWWQQKDLVRLLIRQGLFDRLNGVWL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHH
QDAVAHYRAFPAPWHVAGTDQEVNYIMAFALGGFTNILRVWLAQDEPESPEQVQKGALAG
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
FGQLARSIGGTN
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA