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The map label for this gene is cydA [H]

Identifier: 116493586

GI number: 116493586

Start: 12780

End: 15269

Strand: Direct

Name: cydA [H]

Synonym: LSEI_0012

Alternate gene names: 116493586

Gene position: 12780-15269 (Clockwise)

Preceding gene: 116493585

Following gene: 116493587

Centisome position: 0.44

GC content: 49.56

Gene sequence:

>2490_bases
ATGGGGCTCACGTTAGCCACGATTCCGCTGGCTGTGACGAATCTGTCACGCATGCAGTTTGCGGTAACCGCGATCACGCA
TTTTCTATTTGTAACAACGACCATTGGCATGTTGTTGACGACGATGATTTTTGAATTTATGTACGCGTATGGCCGTGGCG
ATACTGAAAAGTATGGCCGGCTGACCTTATTCTTCAGTCGGATTTTCTTCTTCAGTTTTGGGACAGGTGTTGTTACCGGG
CTGATCATGGAGTTTCAATTTGGGATGAATTGGTCGGCGTTTACGCGGTTGATGGGTGATGTTGCCGGTGTACCACTGGC
GATCGAAAGTATGATTTCCTTCTTCGTTGAGTCGACCATCATCGGTTTATGGCGCTTTACTTGGGGTAAGTTGCCAAAAC
GAGCACATGCTTGGTTAGGCGTTGGGATGTTGGGTGCATCGCTTTTTTCCATTGTCTGGATCATTGCAATCAATGCATTC
ATGCAAAATCCTTATGGTTTCCGTCTGGAAGGTGGCCGTGCACGGCTCACGAGTCTGATTACGTTATTACAGAACCCGCA
ATATCGGCCGGAATTTTTGCATGTTTTATTCGCGATCCTGATCACCGGCGGATTTTTGACAGCAGGGATTGCTGCCTGGC
AGATTCTGCACAAGCGTGATACGTCAGCGTTCAAAATTGCCGTTCAAATTGGCTTACTCATTGCTTTGCCAGCAGCATTC
TTACAGCCGGCACAAGGCGACGATCAAGGTGCCGCAACAGCAGCGTTGCAGCCGATGAAGTTTACCGCAATTGAAGGCCG
GTATGAGACGGAAGGTAGTCCCACAACTGGGGCACCTTGGGCGATGGCTGCGCTGATCAATGAAGACACGCACACAACCA
AGGCCGTGTCGATTCCGAACATGGGGACTTACTTCGGCAAGAACACGTTCACTGGCACCATGCCGGGCATGAACGCTGTT
GCCAAAATGTATCACGCAAAGTTCGATAAGACGGTTGCCAAGTCGTACGATGGCCAGATGACTTATTATCCGCCAGTGAC
CCTGCTGTTCTGGACCATGCATTTGATGGTTTATGCGGGGTACTTCTTCACGATGTTCGCGTTGTTTGCGACGATCATGC
TGCATCGGCGGCAATCGGCAATCGAAGATCATCCCAAAACGTTGCGGACACTCGGTTGGGTACTATGGCTGCCATATTTG
ACCTTCACATCTGGCTGGATCGTTGCGGAAGTTGGCCGATATCCATTTGTGGTTTATGGGCTACTCACGCAGTACGATGC
GGTTTCACCGAGTGTGACCGTCACTGAGGCTGGTACGAGTCTGGCCTTGTTCTTAATGGCCGATATCTTCTTAGTGACCA
CGATGATTTACATTTCACATCGCACTGTTAAACGCGGTTGCCGCAAATCACCGGTGATTATCCAGAAGATCGCACAATTC
CGGATCCATTTGCAAAGGAGGCGTTCAGTCATGCCTAGCCTTTCAAATTTACAAGTGATCTTTCTAGGTATCATTTCGAC
TGAGCTGATGCTATTCTTCGTTTTGGACGGCGCTGATTTCGGAGCCGGCATGGCGACATTCTTTGTTGGCGATGATCTAT
CCAAGCGTCAACAAATTATGAAGGTTACTGGACCAGTTTGGGGCGGTAATGAGACTTGGGCGGTCACCGCCTTTGCAGTG
ATGTTTGCGGCTTATCCGGGGTGGTACTCAGCGTTAACATCCGGTTATTACCCACTCATCTTCCTTATGCTGTTCTTTCT
GATCTTTCGCGGGGTCTCGTTTGATTATCGCAATCAATGGCACAGTCGCCACTACAATCGCTTCTGGGACTGGGCACTTT
TCATTGGCAGTTTAATGCCACCATTCCTGTTAGGCATTATCTTTAGTTCCACAGTAAGCGGCGTGCCGATTCGCAATGGC
TTCGTCTACGCCAGCATGGGTGACATTCTGACGCCATTCAGTATCCTCGGCGGCATTCTGGCCGTTCTCTTCAGCCTGAA
TGTTGGTTTGAATCGGGTCATCAAAAAAGTTACCGAACCGGTAGCAACAAGTTTGACCGTTGCGTTAAAACGAACCACTT
GGATCCTCTATCCAGCGCTCGTCTTGTTTGCCATCTTATTGCCGTTTAACACGCAGTTCTTTACCAACCGGCCTGTCATT
GTCACGTTACTGCTGATTTTACTGGTGGCCTTCCTCGGTGTTGAAACGTGGGCAATCAGCCAACAACGACGGCGTGTAGC
CTTTTGGCTTAGTGTCGGCACCATGGCCAGCTTCATTTACACCATTTTTCTAGGGGTCTTTCCAACCCTGATTGTTGGCC
GAACGGCGGGTACCTCCATTACGGCGTTAACAGCAACAAGCGGTCCGGTTTCTCTGTTATGGACAGCGTGGTTGTTCGGC
TTCACGATTATCTTGATGGTGGGTTTGCAGGCAACAGCCTATCACCTAATCAATAAGTACTACCACGAGCCGGCATCGCC
AATGATATAA

Upstream 100 bases:

>100_bases
CACAAGCTTATTGTTATATAAAATAACGAGATAGTTCTACAATAGCGGTGATCAGGAATACAGGGAAAAATGACATTATT
GGTTAATAGAGGTGATCAAA

Downstream 100 bases:

>100_bases
GCGGCGGCGAAAAGAAGGTGCATATGATGAAAAAGATCTGGATCAATATCTTCTGGGGGCTGTTAGTCGTCAGCTTCTGG
CTCTATCAGCTCTTCTGGCC

Product: cytochrome bd-type quinol oxidase, fusion of subunit 1 and subunit 2

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 829; Mature: 828

Protein sequence:

>829_residues
MGLTLATIPLAVTNLSRMQFAVTAITHFLFVTTTIGMLLTTMIFEFMYAYGRGDTEKYGRLTLFFSRIFFFSFGTGVVTG
LIMEFQFGMNWSAFTRLMGDVAGVPLAIESMISFFVESTIIGLWRFTWGKLPKRAHAWLGVGMLGASLFSIVWIIAINAF
MQNPYGFRLEGGRARLTSLITLLQNPQYRPEFLHVLFAILITGGFLTAGIAAWQILHKRDTSAFKIAVQIGLLIALPAAF
LQPAQGDDQGAATAALQPMKFTAIEGRYETEGSPTTGAPWAMAALINEDTHTTKAVSIPNMGTYFGKNTFTGTMPGMNAV
AKMYHAKFDKTVAKSYDGQMTYYPPVTLLFWTMHLMVYAGYFFTMFALFATIMLHRRQSAIEDHPKTLRTLGWVLWLPYL
TFTSGWIVAEVGRYPFVVYGLLTQYDAVSPSVTVTEAGTSLALFLMADIFLVTTMIYISHRTVKRGCRKSPVIIQKIAQF
RIHLQRRRSVMPSLSNLQVIFLGIISTELMLFFVLDGADFGAGMATFFVGDDLSKRQQIMKVTGPVWGGNETWAVTAFAV
MFAAYPGWYSALTSGYYPLIFLMLFFLIFRGVSFDYRNQWHSRHYNRFWDWALFIGSLMPPFLLGIIFSSTVSGVPIRNG
FVYASMGDILTPFSILGGILAVLFSLNVGLNRVIKKVTEPVATSLTVALKRTTWILYPALVLFAILLPFNTQFFTNRPVI
VTLLLILLVAFLGVETWAISQQRRRVAFWLSVGTMASFIYTIFLGVFPTLIVGRTAGTSITALTATSGPVSLLWTAWLFG
FTIILMVGLQATAYHLINKYYHEPASPMI

Sequences:

>Translated_829_residues
MGLTLATIPLAVTNLSRMQFAVTAITHFLFVTTTIGMLLTTMIFEFMYAYGRGDTEKYGRLTLFFSRIFFFSFGTGVVTG
LIMEFQFGMNWSAFTRLMGDVAGVPLAIESMISFFVESTIIGLWRFTWGKLPKRAHAWLGVGMLGASLFSIVWIIAINAF
MQNPYGFRLEGGRARLTSLITLLQNPQYRPEFLHVLFAILITGGFLTAGIAAWQILHKRDTSAFKIAVQIGLLIALPAAF
LQPAQGDDQGAATAALQPMKFTAIEGRYETEGSPTTGAPWAMAALINEDTHTTKAVSIPNMGTYFGKNTFTGTMPGMNAV
AKMYHAKFDKTVAKSYDGQMTYYPPVTLLFWTMHLMVYAGYFFTMFALFATIMLHRRQSAIEDHPKTLRTLGWVLWLPYL
TFTSGWIVAEVGRYPFVVYGLLTQYDAVSPSVTVTEAGTSLALFLMADIFLVTTMIYISHRTVKRGCRKSPVIIQKIAQF
RIHLQRRRSVMPSLSNLQVIFLGIISTELMLFFVLDGADFGAGMATFFVGDDLSKRQQIMKVTGPVWGGNETWAVTAFAV
MFAAYPGWYSALTSGYYPLIFLMLFFLIFRGVSFDYRNQWHSRHYNRFWDWALFIGSLMPPFLLGIIFSSTVSGVPIRNG
FVYASMGDILTPFSILGGILAVLFSLNVGLNRVIKKVTEPVATSLTVALKRTTWILYPALVLFAILLPFNTQFFTNRPVI
VTLLLILLVAFLGVETWAISQQRRRVAFWLSVGTMASFIYTIFLGVFPTLIVGRTAGTSITALTATSGPVSLLWTAWLFG
FTIILMVGLQATAYHLINKYYHEPASPMI
>Mature_828_residues
GLTLATIPLAVTNLSRMQFAVTAITHFLFVTTTIGMLLTTMIFEFMYAYGRGDTEKYGRLTLFFSRIFFFSFGTGVVTGL
IMEFQFGMNWSAFTRLMGDVAGVPLAIESMISFFVESTIIGLWRFTWGKLPKRAHAWLGVGMLGASLFSIVWIIAINAFM
QNPYGFRLEGGRARLTSLITLLQNPQYRPEFLHVLFAILITGGFLTAGIAAWQILHKRDTSAFKIAVQIGLLIALPAAFL
QPAQGDDQGAATAALQPMKFTAIEGRYETEGSPTTGAPWAMAALINEDTHTTKAVSIPNMGTYFGKNTFTGTMPGMNAVA
KMYHAKFDKTVAKSYDGQMTYYPPVTLLFWTMHLMVYAGYFFTMFALFATIMLHRRQSAIEDHPKTLRTLGWVLWLPYLT
FTSGWIVAEVGRYPFVVYGLLTQYDAVSPSVTVTEAGTSLALFLMADIFLVTTMIYISHRTVKRGCRKSPVIIQKIAQFR
IHLQRRRSVMPSLSNLQVIFLGIISTELMLFFVLDGADFGAGMATFFVGDDLSKRQQIMKVTGPVWGGNETWAVTAFAVM
FAAYPGWYSALTSGYYPLIFLMLFFLIFRGVSFDYRNQWHSRHYNRFWDWALFIGSLMPPFLLGIIFSSTVSGVPIRNGF
VYASMGDILTPFSILGGILAVLFSLNVGLNRVIKKVTEPVATSLTVALKRTTWILYPALVLFAILLPFNTQFFTNRPVIV
TLLLILLVAFLGVETWAISQQRRRVAFWLSVGTMASFIYTIFLGVFPTLIVGRTAGTSITALTATSGPVSLLWTAWLFGF
TIILMVGLQATAYHLINKYYHEPASPMI

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=498, Percent_Identity=30.1204819277108, Blast_Score=196, Evalue=4e-51,
Organism=Escherichia coli, GI87081779, Length=521, Percent_Identity=30.1343570057582, Blast_Score=190, Evalue=3e-49,
Organism=Escherichia coli, GI1786954, Length=362, Percent_Identity=28.4530386740331, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1787213, Length=174, Percent_Identity=34.4827586206897, Blast_Score=102, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 92532; Mature: 92401

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLTLATIPLAVTNLSRMQFAVTAITHFLFVTTTIGMLLTTMIFEFMYAYGRGDTEKYGR
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LTLFFSRIFFFSFGTGVVTGLIMEFQFGMNWSAFTRLMGDVAGVPLAIESMISFFVESTI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IGLWRFTWGKLPKRAHAWLGVGMLGASLFSIVWIIAINAFMQNPYGFRLEGGRARLTSLI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
TLLQNPQYRPEFLHVLFAILITGGFLTAGIAAWQILHKRDTSAFKIAVQIGLLIALPAAF
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LQPAQGDDQGAATAALQPMKFTAIEGRYETEGSPTTGAPWAMAALINEDTHTTKAVSIPN
HCCCCCCCCCCHHHHCCCCEEEEECCEEECCCCCCCCCCHHHHHHHCCCCCCCEEEECCC
MGTYFGKNTFTGTMPGMNAVAKMYHAKFDKTVAKSYDGQMTYYPPVTLLFWTMHLMVYAG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHH
YFFTMFALFATIMLHRRQSAIEDHPKTLRTLGWVLWLPYLTFTSGWIVAEVGRYPFVVYG
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHH
LLTQYDAVSPSVTVTEAGTSLALFLMADIFLVTTMIYISHRTVKRGCRKSPVIIQKIAQF
HHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RIHLQRRRSVMPSLSNLQVIFLGIISTELMLFFVLDGADFGAGMATFFVGDDLSKRQQIM
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCHHHEEECCCHHHHHHHH
KVTGPVWGGNETWAVTAFAVMFAAYPGWYSALTSGYYPLIFLMLFFLIFRGVSFDYRNQW
HHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
HSRHYNRFWDWALFIGSLMPPFLLGIIFSSTVSGVPIRNGFVYASMGDILTPFSILGGIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCEEEEEHHHHHHHHHHHHHHH
AVLFSLNVGLNRVIKKVTEPVATSLTVALKRTTWILYPALVLFAILLPFNTQFFTNRPVI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
VTLLLILLVAFLGVETWAISQQRRRVAFWLSVGTMASFIYTIFLGVFPTLIVGRTAGTSI
HHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
TALTATSGPVSLLWTAWLFGFTIILMVGLQATAYHLINKYYHEPASPMI
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GLTLATIPLAVTNLSRMQFAVTAITHFLFVTTTIGMLLTTMIFEFMYAYGRGDTEKYGR
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LTLFFSRIFFFSFGTGVVTGLIMEFQFGMNWSAFTRLMGDVAGVPLAIESMISFFVESTI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IGLWRFTWGKLPKRAHAWLGVGMLGASLFSIVWIIAINAFMQNPYGFRLEGGRARLTSLI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
TLLQNPQYRPEFLHVLFAILITGGFLTAGIAAWQILHKRDTSAFKIAVQIGLLIALPAAF
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LQPAQGDDQGAATAALQPMKFTAIEGRYETEGSPTTGAPWAMAALINEDTHTTKAVSIPN
HCCCCCCCCCCHHHHCCCCEEEEECCEEECCCCCCCCCCHHHHHHHCCCCCCCEEEECCC
MGTYFGKNTFTGTMPGMNAVAKMYHAKFDKTVAKSYDGQMTYYPPVTLLFWTMHLMVYAG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHH
YFFTMFALFATIMLHRRQSAIEDHPKTLRTLGWVLWLPYLTFTSGWIVAEVGRYPFVVYG
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHH
LLTQYDAVSPSVTVTEAGTSLALFLMADIFLVTTMIYISHRTVKRGCRKSPVIIQKIAQF
HHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RIHLQRRRSVMPSLSNLQVIFLGIISTELMLFFVLDGADFGAGMATFFVGDDLSKRQQIM
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCHHHEEECCCHHHHHHHH
KVTGPVWGGNETWAVTAFAVMFAAYPGWYSALTSGYYPLIFLMLFFLIFRGVSFDYRNQW
HHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
HSRHYNRFWDWALFIGSLMPPFLLGIIFSSTVSGVPIRNGFVYASMGDILTPFSILGGIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCEEEEEHHHHHHHHHHHHHHH
AVLFSLNVGLNRVIKKVTEPVATSLTVALKRTTWILYPALVLFAILLPFNTQFFTNRPVI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
VTLLLILLVAFLGVETWAISQQRRRVAFWLSVGTMASFIYTIFLGVFPTLIVGRTAGTSI
HHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
TALTATSGPVSLLWTAWLFGFTIILMVGLQATAYHLINKYYHEPASPMI
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]