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The map label for this gene is ssb [H]

Identifier: 116493584

GI number: 116493584

Start: 11419

End: 12015

Strand: Direct

Name: ssb [H]

Synonym: LSEI_0010

Alternate gene names: 116493584

Gene position: 11419-12015 (Clockwise)

Preceding gene: 116493583

Following gene: 116493585

Centisome position: 0.39

GC content: 51.26

Gene sequence:

>597_bases
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCACCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Upstream 100 bases:

>100_bases
TGAATTTGATCGTCTTGGCAAGATCAACAACGATATTCTGCGTCACATGATCGTGAAGCGAGAAGACTAATCGTAACTTT
TTTGAAAGGGGCGCTACGGC

Downstream 100 bases:

>100_bases
GGTGTGACTCAAAGTCGCACTAACCGCGGTAATCCCTTCAGGCGAAGGGTTATCTAAGTGGAATCTTTGATAAGGGAGGA
ATTCTCATGGCACAACAACG

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSPNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Sequences:

>Translated_198_residues
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSPNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
>Mature_198_residues
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSPNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790494, Length=99, Percent_Identity=39.3939393939394, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 21149; Mature: 21149

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAEN
CCCCEEECCCCCCCEEEEECCCCCCEEEEEEEEEHHHHHCCCCCCCCEEEEEEECCCHHH
FANFTKKGSMVGVEGHIQTRTYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPA
HHHHHHCCCEEEECCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSPNPGQNPAASQNQGGNSAANPANPD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PFANNGKPIDISDDDLPF
CCCCCCCEECCCCCCCCC
>Mature Secondary Structure
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAEN
CCCCEEECCCCCCCEEEEECCCCCCEEEEEEEEEHHHHHCCCCCCCCEEEEEEECCCHHH
FANFTKKGSMVGVEGHIQTRTYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPA
HHHHHHCCCEEEECCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSPNPGQNPAASQNQGGNSAANPANPD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PFANNGKPIDISDDDLPF
CCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]