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The map label for this gene is yciR [C]

Identifier: 116493370

GI number: 116493370

Start: 1626531

End: 1627211

Strand: Direct

Name: yciR [C]

Synonym: PEPE_1642

Alternate gene names: 116493370

Gene position: 1626531-1627211 (Clockwise)

Preceding gene: 116493360

Following gene: 116493384

Centisome position: 88.77

GC content: 38.03

Gene sequence:

>681_bases
ATGCTTAGATTTTTTATCCAACCGCAGTTAAATACGATTGTTGATTCAGTAATTGGTTACGAGATGCTGATCAAAGAATA
CCGCGATGGGACCTGGCGAATGCCTGCTTCTTTTTCAGCAATTCCAGCCCATGATATGGCAGAATTACTGATTGCAACTG
CTAAAGAATTATCTCTTAAAGTTGGTTCAGTTTCATTTAATGTTGATCGTAACCAAATTCTTGATGATCAACTAATTCAC
GCTTTAATTGCCGCCCAGACAGTTTTACGTCCAGTTAAATTAATTATCGAATTAATTGAAAATGATGTTAAACCCTCGGT
GTCTGATGAGCAATTAATTGAAGTTGTTACGCAATTGAATGACTTTGGAATCCAATTTTGTCTCGATGACGTTGGTAGCG
GAATTAATACATGGCCTGCAGTTAAGCCTCTACTACCATACACTCGTGAACTTAAATACGCTCTCCAAAATTATAAAGAG
CATTTGAACGAATCTGCCGCTGAAAATCACGTTACCTTTTGGCAAAACCTAGCAACTAAACATCAAATGCGTTTCATTTT
GGAAGGTATCGAAGATGATAATGATGATGCTTGGGCCGATTCTATGAATATCGATTTACGCCAAGGATACTACTATGGCC
GCCCTACACTAATGAAAATACATCCCGATGATCCCGATTAA

Upstream 100 bases:

>100_bases
ATGCTTTATATTTTAATTTTAGACTGGATTAAGACTTTGTAAATGCTTTAATAAGGAAAATTAGCAAACTAACCACGCCA
AATTTCAAGGAGTTTACTTA

Downstream 100 bases:

>100_bases
CTTATGTAAAGAAAAACCGCGTTGCGAGACACAATCGTAACACGGTTTTTTATTTAGTTTCTATTCGATTTCAATTCCGG
AAGTCTTTTCACCACTGGCC

Product: C-di-GMP-specific phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MLRFFIQPQLNTIVDSVIGYEMLIKEYRDGTWRMPASFSAIPAHDMAELLIATAKELSLKVGSVSFNVDRNQILDDQLIH
ALIAAQTVLRPVKLIIELIENDVKPSVSDEQLIEVVTQLNDFGIQFCLDDVGSGINTWPAVKPLLPYTRELKYALQNYKE
HLNESAAENHVTFWQNLATKHQMRFILEGIEDDNDDAWADSMNIDLRQGYYYGRPTLMKIHPDDPD

Sequences:

>Translated_226_residues
MLRFFIQPQLNTIVDSVIGYEMLIKEYRDGTWRMPASFSAIPAHDMAELLIATAKELSLKVGSVSFNVDRNQILDDQLIH
ALIAAQTVLRPVKLIIELIENDVKPSVSDEQLIEVVTQLNDFGIQFCLDDVGSGINTWPAVKPLLPYTRELKYALQNYKE
HLNESAAENHVTFWQNLATKHQMRFILEGIEDDNDDAWADSMNIDLRQGYYYGRPTLMKIHPDDPD
>Mature_226_residues
MLRFFIQPQLNTIVDSVIGYEMLIKEYRDGTWRMPASFSAIPAHDMAELLIATAKELSLKVGSVSFNVDRNQILDDQLIH
ALIAAQTVLRPVKLIIELIENDVKPSVSDEQLIEVVTQLNDFGIQFCLDDVGSGINTWPAVKPLLPYTRELKYALQNYKE
HLNESAAENHVTFWQNLATKHQMRFILEGIEDDNDDAWADSMNIDLRQGYYYGRPTLMKIHPDDPD

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25849; Mature: 25849

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFFIQPQLNTIVDSVIGYEMLIKEYRDGTWRMPASFSAIPAHDMAELLIATAKELSLK
CCEEEECCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHEE
VGSVSFNVDRNQILDDQLIHALIAAQTVLRPVKLIIELIENDVKPSVSDEQLIEVVTQLN
ECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
DFGIQFCLDDVGSGINTWPAVKPLLPYTRELKYALQNYKEHLNESAAENHVTFWQNLATK
HHHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HQMRFILEGIEDDNDDAWADSMNIDLRQGYYYGRPTLMKIHPDDPD
HHHHHHHHCCCCCCCCCHHCCCCCCCCCCEEECCCEEEEECCCCCC
>Mature Secondary Structure
MLRFFIQPQLNTIVDSVIGYEMLIKEYRDGTWRMPASFSAIPAHDMAELLIATAKELSLK
CCEEEECCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHEE
VGSVSFNVDRNQILDDQLIHALIAAQTVLRPVKLIIELIENDVKPSVSDEQLIEVVTQLN
ECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
DFGIQFCLDDVGSGINTWPAVKPLLPYTRELKYALQNYKEHLNESAAENHVTFWQNLATK
HHHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HQMRFILEGIEDDNDDAWADSMNIDLRQGYYYGRPTLMKIHPDDPD
HHHHHHHHCCCCCCCCCHHCCCCCCCCCCEEECCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA