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The map label for this gene is yvoA [H]

Identifier: 116493264

GI number: 116493264

Start: 1496483

End: 1497184

Strand: Reverse

Name: yvoA [H]

Synonym: PEPE_1527

Alternate gene names: 116493264

Gene position: 1497184-1496483 (Counterclockwise)

Preceding gene: 116493265

Following gene: 116493262

Centisome position: 81.71

GC content: 38.18

Gene sequence:

>702_bases
ATGAATTCACCGGTATATATTCAAATTCATAATGAAATCAAAAAGGCGATTGAAGCCGGGAAATGGAAAGTGGGAGAGCG
AATTCCAGCTGAACGTGAACTTTCTACAGAATTTAGTGTAAGTCGAATGACTCTTCGCCAAGCTATTTCAACTTTGGTTG
ATGAGGGAATTTTGGAACGTAAGGTGGGTTCGGGAACCTATGTTGCTAGTCAGAAAGTTCAAGAAAAGGTTTCAGGAGTT
ACTAGTTTTACGGAATTAACGGAGGCTCAAGGTAAAAAGCCGTCTAGTCGGACAATTTCGTACCATACTAGTGAACCTTC
TTTAAGTGAAATTGAAAAATTACAGTTAAATGATGGTGATCTAGTATTGCGGATGGAGCGTATTCGATTTGCTGACGCTG
TTCCAATTTGTTATGAAACGGCAACTATTCCAGAAAAGCTAGTTAGTGATTTTAGTAAATCTGAAGTGACTAAATCACTT
TATAAAACTCTGGAAGAAAAAGCAGGGTTGATGATTGGACGTGCGGAACAAACCGTCTCGGCGATGTTGGCTTCTGAAAA
AGTGTCAGAGTATTTAGATATTAAACGTGGCGATGCAATTCTACGTTTACATCAATTATCGTATGCTCAAGATGGTACAC
CGTTTGAATATGTACGTACTCAGTATGTAGGCGAACGTTTTGAATTTTATTTAAATCGTTAA

Upstream 100 bases:

>100_bases
TCAACGTCTTTGATAGCAACCTTAACAAATTGGAAACATATAGTTACGGGAAAAAGTTTTCTAAAGAAGACTAATAGTCA
AACATTATAGGGGTACAAGA

Downstream 100 bases:

>100_bases
TAAAAAAGAAGGAAGAATAGGCTAATCCTATTTTTCCTTCTTTTTATTTGCTTTAAAGGCTTCCATCATAAAAATCGGTA
ATACTATTTGGCGTTTGATT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MNSPVYIQIHNEIKKAIEAGKWKVGERIPAERELSTEFSVSRMTLRQAISTLVDEGILERKVGSGTYVASQKVQEKVSGV
TSFTELTEAQGKKPSSRTISYHTSEPSLSEIEKLQLNDGDLVLRMERIRFADAVPICYETATIPEKLVSDFSKSEVTKSL
YKTLEEKAGLMIGRAEQTVSAMLASEKVSEYLDIKRGDAILRLHQLSYAQDGTPFEYVRTQYVGERFEFYLNR

Sequences:

>Translated_233_residues
MNSPVYIQIHNEIKKAIEAGKWKVGERIPAERELSTEFSVSRMTLRQAISTLVDEGILERKVGSGTYVASQKVQEKVSGV
TSFTELTEAQGKKPSSRTISYHTSEPSLSEIEKLQLNDGDLVLRMERIRFADAVPICYETATIPEKLVSDFSKSEVTKSL
YKTLEEKAGLMIGRAEQTVSAMLASEKVSEYLDIKRGDAILRLHQLSYAQDGTPFEYVRTQYVGERFEFYLNR
>Mature_233_residues
MNSPVYIQIHNEIKKAIEAGKWKVGERIPAERELSTEFSVSRMTLRQAISTLVDEGILERKVGSGTYVASQKVQEKVSGV
TSFTELTEAQGKKPSSRTISYHTSEPSLSEIEKLQLNDGDLVLRMERIRFADAVPICYETATIPEKLVSDFSKSEVTKSL
YKTLEEKAGLMIGRAEQTVSAMLASEKVSEYLDIKRGDAILRLHQLSYAQDGTPFEYVRTQYVGERFEFYLNR

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=238, Percent_Identity=33.1932773109244, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790118, Length=215, Percent_Identity=26.9767441860465, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082252, Length=213, Percent_Identity=28.6384976525822, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788418, Length=216, Percent_Identity=25.462962962963, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790540, Length=213, Percent_Identity=24.8826291079812, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26328; Mature: 26328

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPVYIQIHNEIKKAIEAGKWKVGERIPAERELSTEFSVSRMTLRQAISTLVDEGILER
CCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
KVGSGTYVASQKVQEKVSGVTSFTELTEAQGKKPSSRTISYHTSEPSLSEIEKLQLNDGD
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCCC
LVLRMERIRFADAVPICYETATIPEKLVSDFSKSEVTKSLYKTLEEKAGLMIGRAEQTVS
EEEEHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHH
AMLASEKVSEYLDIKRGDAILRLHQLSYAQDGTPFEYVRTQYVGERFEFYLNR
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNSPVYIQIHNEIKKAIEAGKWKVGERIPAERELSTEFSVSRMTLRQAISTLVDEGILER
CCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
KVGSGTYVASQKVQEKVSGVTSFTELTEAQGKKPSSRTISYHTSEPSLSEIEKLQLNDGD
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCCC
LVLRMERIRFADAVPICYETATIPEKLVSDFSKSEVTKSLYKTLEEKAGLMIGRAEQTVS
EEEEHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHH
AMLASEKVSEYLDIKRGDAILRLHQLSYAQDGTPFEYVRTQYVGERFEFYLNR
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]