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The map label for this gene is ytbD [H]

Identifier: 116493247

GI number: 116493247

Start: 1475824

End: 1477011

Strand: Reverse

Name: ytbD [H]

Synonym: PEPE_1509

Alternate gene names: 116493247

Gene position: 1477011-1475824 (Counterclockwise)

Preceding gene: 116493248

Following gene: 116493246

Centisome position: 80.61

GC content: 35.94

Gene sequence:

>1188_bases
ATGATTAATCAAAAATCTAAAGCTAATTTTGCTTTATTTGCTTTGGCAGTAATATTTTTTGCGGTTGGTGTCACAGAATT
TATTAGCGTGGGGGTACTACCAGCGATTTCAAAAAGTTTTATGATTACGACTTCAACAGCCGGACTAATAACTACTATTT
ATGCTTTAGGAGTAGCATTAGGCGCTCCAATTTTAACAATTTTAACTGCTAAATTTCAGCGGAAAGGAACTATTTTAGGG
GCTATTATTATTTTTATAATCGGTCACTTAATTATTGGATTTGCTACCAATTTTGGAGAAGTCATTTTCGGTAGGTTAAT
AGCTGGTGCTTCACATGGGTTATTGTTTGCGCTCAGTTCGACAATAGCCGCCGAATTAGTTGATGAATCCAGACAAGCGA
GTGCAATTGCTTATATTTTTACGGGTTTCACAATTGCGACAGCACTGGGTGCTCCATTGGGGACGGCGGTTAGTACTTAT
TGGGGATGGCGGATACCTTTTTTGGCGATTGCGACTTTAGGAATAGTAGCATGGATTTTAAATCGAGTAGCTTTACCTAA
ACAAGCTAGAAAGAATGTAGAAATATCCAGCATAGCAGATCAAGTAAAGTTGATTTTGCATCCACATGTTTTATTAACGC
TCCTAATTACCATCTTAGGATATGGTGGTACTTTTGCAACCTTCACGTATTTATCATCAATTTTGCAAAAGATAACCCAT
GTCCCTGCGAATCAAGTTAGTTTATTCTTAGTGATTTATGGTATAGCTATCGCAATTGGAAATACGCTTGGTGGTAAACT
AGGAAATGCTAAACCGATTAACGCTTTATTCGGGATCTTCATCGTTCAAGGGTTAGCTTTATTTGCTTTTTATTTTACAG
TTACTAATATATATTTAAGTACTTTAAATATCGTGCTCTTAGGTTTAGTTGCTTTTATGAGCGTTCCCGTTCTACAGTCG
TATATTTTAATTTTAGCTAAAAGTTATTCATCTAAAGCAGTTGATGTTGCCTCATCCTTGAATATTTCTGCTTTTAGTTT
TGGCATTGTAGGTGGGTCTTTCTTAGGAGGAGTTGCACTTGATACTTATGGCTTAAGAAGCACAATGCTACTAGCAGCAG
CTATGGTTGCATTAGCAGTTTTAATGATGTTGGTAGAAAATAAATTTGAAAATAAACGTCAGAAATAG

Upstream 100 bases:

>100_bases
AATTTTGTCTCTATGCGACAAAATTGTGCGTACTTCTATAAATGTCATAATTCACTTATATTATCTATATCGTTTGAGAG
AGAAAATATGAGGTGAGATA

Downstream 100 bases:

>100_bases
TTTTAGAAAATGCTGTCGTTCCAAAAGGACGTGCTAAAATTACCCAGTAGGAGGTTTGGTTAGATGCCTGAAAAAATATA
TCATGTAGCAGTTGAAGCAA

Product: arabinose efflux permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MINQKSKANFALFALAVIFFAVGVTEFISVGVLPAISKSFMITTSTAGLITTIYALGVALGAPILTILTAKFQRKGTILG
AIIIFIIGHLIIGFATNFGEVIFGRLIAGASHGLLFALSSTIAAELVDESRQASAIAYIFTGFTIATALGAPLGTAVSTY
WGWRIPFLAIATLGIVAWILNRVALPKQARKNVEISSIADQVKLILHPHVLLTLLITILGYGGTFATFTYLSSILQKITH
VPANQVSLFLVIYGIAIAIGNTLGGKLGNAKPINALFGIFIVQGLALFAFYFTVTNIYLSTLNIVLLGLVAFMSVPVLQS
YILILAKSYSSKAVDVASSLNISAFSFGIVGGSFLGGVALDTYGLRSTMLLAAAMVALAVLMMLVENKFENKRQK

Sequences:

>Translated_395_residues
MINQKSKANFALFALAVIFFAVGVTEFISVGVLPAISKSFMITTSTAGLITTIYALGVALGAPILTILTAKFQRKGTILG
AIIIFIIGHLIIGFATNFGEVIFGRLIAGASHGLLFALSSTIAAELVDESRQASAIAYIFTGFTIATALGAPLGTAVSTY
WGWRIPFLAIATLGIVAWILNRVALPKQARKNVEISSIADQVKLILHPHVLLTLLITILGYGGTFATFTYLSSILQKITH
VPANQVSLFLVIYGIAIAIGNTLGGKLGNAKPINALFGIFIVQGLALFAFYFTVTNIYLSTLNIVLLGLVAFMSVPVLQS
YILILAKSYSSKAVDVASSLNISAFSFGIVGGSFLGGVALDTYGLRSTMLLAAAMVALAVLMMLVENKFENKRQK
>Mature_395_residues
MINQKSKANFALFALAVIFFAVGVTEFISVGVLPAISKSFMITTSTAGLITTIYALGVALGAPILTILTAKFQRKGTILG
AIIIFIIGHLIIGFATNFGEVIFGRLIAGASHGLLFALSSTIAAELVDESRQASAIAYIFTGFTIATALGAPLGTAVSTY
WGWRIPFLAIATLGIVAWILNRVALPKQARKNVEISSIADQVKLILHPHVLLTLLITILGYGGTFATFTYLSSILQKITH
VPANQVSLFLVIYGIAIAIGNTLGGKLGNAKPINALFGIFIVQGLALFAFYFTVTNIYLSTLNIVLLGLVAFMSVPVLQS
YILILAKSYSSKAVDVASSLNISAFSFGIVGGSFLGGVALDTYGLRSTMLLAAAMVALAVLMMLVENKFENKRQK

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=342, Percent_Identity=34.5029239766082, Blast_Score=194, Evalue=8e-51,
Organism=Escherichia coli, GI1786595, Length=395, Percent_Identity=27.3417721518987, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1787808, Length=256, Percent_Identity=29.296875, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI145693198, Length=391, Percent_Identity=23.2736572890026, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41839; Mature: 41839

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINQKSKANFALFALAVIFFAVGVTEFISVGVLPAISKSFMITTSTAGLITTIYALGVAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECHHHHHHHHHHHHHHH
GAPILTILTAKFQRKGTILGAIIIFIIGHLIIGFATNFGEVIFGRLIAGASHGLLFALSS
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
TIAAELVDESRQASAIAYIFTGFTIATALGAPLGTAVSTYWGWRIPFLAIATLGIVAWIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
NRVALPKQARKNVEISSIADQVKLILHPHVLLTLLITILGYGGTFATFTYLSSILQKITH
HHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
VPANQVSLFLVIYGIAIAIGNTLGGKLGNAKPINALFGIFIVQGLALFAFYFTVTNIYLS
CCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLNIVLLGLVAFMSVPVLQSYILILAKSYSSKAVDVASSLNISAFSFGIVGGSFLGGVAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCHHHHCCHHH
DTYGLRSTMLLAAAMVALAVLMMLVENKFENKRQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MINQKSKANFALFALAVIFFAVGVTEFISVGVLPAISKSFMITTSTAGLITTIYALGVAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECHHHHHHHHHHHHHHH
GAPILTILTAKFQRKGTILGAIIIFIIGHLIIGFATNFGEVIFGRLIAGASHGLLFALSS
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
TIAAELVDESRQASAIAYIFTGFTIATALGAPLGTAVSTYWGWRIPFLAIATLGIVAWIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
NRVALPKQARKNVEISSIADQVKLILHPHVLLTLLITILGYGGTFATFTYLSSILQKITH
HHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
VPANQVSLFLVIYGIAIAIGNTLGGKLGNAKPINALFGIFIVQGLALFAFYFTVTNIYLS
CCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLNIVLLGLVAFMSVPVLQSYILILAKSYSSKAVDVASSLNISAFSFGIVGGSFLGGVAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCHHHHCCHHH
DTYGLRSTMLLAAAMVALAVLMMLVENKFENKRQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]