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The map label for this gene is ytcD [H]

Identifier: 116493246

GI number: 116493246

Start: 1475380

End: 1475760

Strand: Reverse

Name: ytcD [H]

Synonym: PEPE_1508

Alternate gene names: 116493246

Gene position: 1475760-1475380 (Counterclockwise)

Preceding gene: 116493247

Following gene: 116493242

Centisome position: 80.54

GC content: 38.06

Gene sequence:

>381_bases
ATGCCTGAAAAAATATATCATGTAGCAGTTGAAGCAACTTTAGATGTAATAGGAGGAAAATGGAAACCCGTCATTCTATG
TCATCTAGGAGGTCGTACTCTAAGAACGGGAGAGTTATGTCAGTTAATGCCGGATGTTTCACAAAGAGTATTAACTAGGC
AATTGCGCGAACTAGAAGCCGACAATATTGTTCAACGTAAGGTGTACAACCAGGTACCGCCAAAGGTTGAATATTCTTTA
ACCAAAGAGGGAAAAAGTCTAAGAAATATTTTATTAGCAATGTCAAATTGGGGTAAGGATAAGGTCGAACGTCTGCAAAA
ACAAGGTAATAGTGTGGAAATTATTGATAACGATCCGCATCCCTTTTCAAATATGGAGTAG

Upstream 100 bases:

>100_bases
GGTAGAAAATAAATTTGAAAATAAACGTCAGAAATAGTTTTAGAAAATGCTGTCGTTCCAAAAGGACGTGCTAAAATTAC
CCAGTAGGAGGTTTGGTTAG

Downstream 100 bases:

>100_bases
TAAAAAAGCGACTAGTTAAGGACCGATTTTCATTTGGTCCACAGCTAGTCGCTTTTTTATTGATAAAATTATTTATTAAT
CTTGATAAGCCAAAGATCCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MPEKIYHVAVEATLDVIGGKWKPVILCHLGGRTLRTGELCQLMPDVSQRVLTRQLRELEADNIVQRKVYNQVPPKVEYSL
TKEGKSLRNILLAMSNWGKDKVERLQKQGNSVEIIDNDPHPFSNME

Sequences:

>Translated_126_residues
MPEKIYHVAVEATLDVIGGKWKPVILCHLGGRTLRTGELCQLMPDVSQRVLTRQLRELEADNIVQRKVYNQVPPKVEYSL
TKEGKSLRNILLAMSNWGKDKVERLQKQGNSVEIIDNDPHPFSNME
>Mature_125_residues
PEKIYHVAVEATLDVIGGKWKPVILCHLGGRTLRTGELCQLMPDVSQRVLTRQLRELEADNIVQRKVYNQVPPKVEYSLT
KEGKSLRNILLAMSNWGKDKVERLQKQGNSVEIIDNDPHPFSNME

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14393; Mature: 14262

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEKIYHVAVEATLDVIGGKWKPVILCHLGGRTLRTGELCQLMPDVSQRVLTRQLRELEA
CCCHHEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCH
DNIVQRKVYNQVPPKVEYSLTKEGKSLRNILLAMSNWGKDKVERLQKQGNSVEIIDNDPH
HHHHHHHHHHCCCCCEEEEHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCC
PFSNME
CCCCCC
>Mature Secondary Structure 
PEKIYHVAVEATLDVIGGKWKPVILCHLGGRTLRTGELCQLMPDVSQRVLTRQLRELEA
CCHHEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCH
DNIVQRKVYNQVPPKVEYSLTKEGKSLRNILLAMSNWGKDKVERLQKQGNSVEIIDNDPH
HHHHHHHHHHCCCCCEEEEHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCC
PFSNME
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]