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The map label for this gene is recR

Identifier: 116493220

GI number: 116493220

Start: 1453243

End: 1453842

Strand: Reverse

Name: recR

Synonym: PEPE_1482

Alternate gene names: 116493220

Gene position: 1453842-1453243 (Counterclockwise)

Preceding gene: 116493221

Following gene: 116493219

Centisome position: 79.34

GC content: 39.5

Gene sequence:

>600_bases
ATGCAATATCCAGAACCGATTGCGAAATTAATCGATAGTTTCATGAAATTACCAGGTATTGGTTATAAAACGGCAACCCG
ATTAGCATTTTTTACGTTAGATATGGAAAAAGATGATGTAACCGAATTTGCTAAGGCGCTGATTTCAGCACAACGGGACC
TAAGTTTCTGTAGTATTTGTGGAAATATTACGGAAGATGATCCATGTGATATTTGTCAGGACCCTTCACGAGATCAAAAA
GCGGTTTTAGTAGTCGAAGATTCTAAGGACGTAATGTCAATGGAACAGATGAAAGAATACCATGGCTTGTATCATGTGTT
ACATGGCGTGTTATCACCCATGGATGGTAAAGGCCCTGAAGACATCAATATTGCTGCGTTACTTACCCGTTTACAGAAGA
ACGAGGCCATTAAAGAAGTTATTATTGCTACAAATGCAACTCCAGAAGGGGAAGCGACAGCGATGTATATTTCAAGATTG
GTTAAACCGTCCGGCATTAAAGTTACTCGTTTAGCTCACGGGTTATCGGTCGGAAGTGATATTGAATATGCGGATCAAAT
GACTTTATATAAAGCGGTTGAAGGCCGAACAGAAATGTAA

Upstream 100 bases:

>100_bases
ACGCTATGAATCGTGTGGATAGTGAAACTAATAAAACAATGGGAAAATACACTAAGGGCATCCCCGGAATGTAATTAAGA
ATCGTAGGTGATAGACCGTT

Downstream 100 bases:

>100_bases
AGCAAAATAATTAAAAGATGAGTTAATGCGATTTTACCAGCGCGTTAGCTCATTTTTTTAAATTAATATGGTGATATTTT
AATTAAGGTTAATAGACAGT

Product: recombination protein RecR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MQYPEPIAKLIDSFMKLPGIGYKTATRLAFFTLDMEKDDVTEFAKALISAQRDLSFCSICGNITEDDPCDICQDPSRDQK
AVLVVEDSKDVMSMEQMKEYHGLYHVLHGVLSPMDGKGPEDINIAALLTRLQKNEAIKEVIIATNATPEGEATAMYISRL
VKPSGIKVTRLAHGLSVGSDIEYADQMTLYKAVEGRTEM

Sequences:

>Translated_199_residues
MQYPEPIAKLIDSFMKLPGIGYKTATRLAFFTLDMEKDDVTEFAKALISAQRDLSFCSICGNITEDDPCDICQDPSRDQK
AVLVVEDSKDVMSMEQMKEYHGLYHVLHGVLSPMDGKGPEDINIAALLTRLQKNEAIKEVIIATNATPEGEATAMYISRL
VKPSGIKVTRLAHGLSVGSDIEYADQMTLYKAVEGRTEM
>Mature_199_residues
MQYPEPIAKLIDSFMKLPGIGYKTATRLAFFTLDMEKDDVTEFAKALISAQRDLSFCSICGNITEDDPCDICQDPSRDQK
AVLVVEDSKDVMSMEQMKEYHGLYHVLHGVLSPMDGKGPEDINIAALLTRLQKNEAIKEVIIATNATPEGEATAMYISRL
VKPSGIKVTRLAHGLSVGSDIEYADQMTLYKAVEGRTEM

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain

Homologues:

Organism=Escherichia coli, GI1786678, Length=197, Percent_Identity=40.1015228426396, Blast_Score=152, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECR_PEDPA (Q03E59)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804955.1
- ProteinModelPortal:   Q03E59
- SMR:   Q03E59
- STRING:   Q03E59
- GeneID:   4417252
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1482
- NMPDR:   fig|278197.10.peg.1306
- eggNOG:   COG0353
- HOGENOM:   HBG571744
- OMA:   HGAISPM
- PhylomeDB:   Q03E59
- ProtClustDB:   PRK00076
- BioCyc:   PPEN278197:PEPE_1482-MONOMER
- HAMAP:   MF_00017
- InterPro:   IPR003583
- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967
- SMART:   SM00278
- SMART:   SM00493
- TIGRFAMs:   TIGR00615

Pfam domain/function: PF02132 RecR; PF01751 Toprim; SSF111304 RecR

EC number: NA

Molecular weight: Translated: 22025; Mature: 22025

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYPEPIAKLIDSFMKLPGIGYKTATRLAFFTLDMEKDDVTEFAKALISAQRDLSFCSIC
CCCHHHHHHHHHHHHHCCCCCHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHCHHHHHHH
GNITEDDPCDICQDPSRDQKAVLVVEDSKDVMSMEQMKEYHGLYHVLHGVLSPMDGKGPE
CCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DINIAALLTRLQKNEAIKEVIIATNATPEGEATAMYISRLVKPSGIKVTRLAHGLSVGSD
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
IEYADQMTLYKAVEGRTEM
CHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQYPEPIAKLIDSFMKLPGIGYKTATRLAFFTLDMEKDDVTEFAKALISAQRDLSFCSIC
CCCHHHHHHHHHHHHHCCCCCHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHCHHHHHHH
GNITEDDPCDICQDPSRDQKAVLVVEDSKDVMSMEQMKEYHGLYHVLHGVLSPMDGKGPE
CCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DINIAALLTRLQKNEAIKEVIIATNATPEGEATAMYISRLVKPSGIKVTRLAHGLSVGSD
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
IEYADQMTLYKAVEGRTEM
CHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA