Click here to switch to the map view.

The map label for this gene is rpmD

Identifier: 116493145

GI number: 116493145

Start: 1384442

End: 1384624

Strand: Reverse

Name: rpmD

Synonym: PEPE_1400

Alternate gene names: 116493145

Gene position: 1384624-1384442 (Counterclockwise)

Preceding gene: 116493146

Following gene: 116493144

Centisome position: 75.56

GC content: 35.52

Gene sequence:

>183_bases
ATGTCACAATTAAAAGTTACATTAATTAAAAGTGCTGCACATCGCCTCCCAAAACAAAGAACAATTGTTAAGGAATTAGG
TCTTGGCCGAGTAAATAGCTCTGTAGTCCTACCTAACAATGAGGCAACTCGTGGAGCTATTTTCCACATTGCACATTTAA
TTGAAGTTGAAGAAGTAAAATAA

Upstream 100 bases:

>100_bases
GCTACTTTCGAAGGTCTTAAGAGCATGCGTAATGCAGAAGAAGTTGCTGCCCTTCGTGGGGTTTCAGTCGATCATTTAGC
TGAATAAGGAGGATATTCTG

Downstream 100 bases:

>100_bases
TTTTTGTAAGATTGGAGGTTTCCTTGCATGAAGTTGAATGAATTAATGCCTAGCGAAGGTTCACGCACTAACCGTAAACG
TATTGGTCGTGGTACTTCTA

Product: 50S ribosomal protein L30

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 60; Mature: 59

Protein sequence:

>60_residues
MSQLKVTLIKSAAHRLPKQRTIVKELGLGRVNSSVVLPNNEATRGAIFHIAHLIEVEEVK

Sequences:

>Translated_60_residues
MSQLKVTLIKSAAHRLPKQRTIVKELGLGRVNSSVVLPNNEATRGAIFHIAHLIEVEEVK
>Mature_59_residues
SQLKVTLIKSAAHRLPKQRTIVKELGLGRVNSSVVLPNNEATRGAIFHIAHLIEVEEVK

Specific function: Unknown

COG id: COG1841

COG function: function code J; Ribosomal protein L30/L7E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30_PEDPA (Q03ED4)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804880.1
- ProteinModelPortal:   Q03ED4
- SMR:   Q03ED4
- STRING:   Q03ED4
- GeneID:   4417722
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1400
- NMPDR:   fig|278197.10.peg.1233
- eggNOG:   COG1841
- HOGENOM:   HBG690556
- OMA:   GAIFHIA
- ProtClustDB:   PRK05611
- BioCyc:   PPEN278197:PEPE_1400-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_01371_B
- InterPro:   IPR005996
- InterPro:   IPR016082
- Gene3D:   G3DSA:3.30.1390.20
- PIRSF:   PIRSF002211
- TIGRFAMs:   TIGR01308

Pfam domain/function: PF00327 Ribosomal_L30; SSF55129 Ribosomal_L30

EC number: NA

Molecular weight: Translated: 6642; Mature: 6511

Theoretical pI: Translated: 10.94; Mature: 10.94

Prosite motif: PS00634 RIBOSOMAL_L30

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLKVTLIKSAAHRLPKQRTIVKELGLGRVNSSVVLPNNEATRGAIFHIAHLIEVEEVK
CCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQLKVTLIKSAAHRLPKQRTIVKELGLGRVNSSVVLPNNEATRGAIFHIAHLIEVEEVK
CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA