| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is adk [H]
Identifier: 116493142
GI number: 116493142
Start: 1381990
End: 1382649
Strand: Reverse
Name: adk [H]
Synonym: PEPE_1397
Alternate gene names: 116493142
Gene position: 1382649-1381990 (Counterclockwise)
Preceding gene: 116493143
Following gene: 116493141
Centisome position: 75.46
GC content: 37.88
Gene sequence:
>660_bases ATGAGTAAATTAAACCTCGTTTTGATGGGTCTTCCAGGTGCTGGTAAAGGTACACAGGCTCAGAGAATTATTGAGGATTT CAAAATTCCACATATTTCAACTGGTGACATTTTCCGTGAAGCTATGAAAAATGAAACCGAAATGGGTGTGGAAGCAAAGA AGTTCATTGATAAGGGTGAACTTGTTCCCGATAGTGTAACTAACGGGATCGTCGAAGATCGTCTTGCAATGGACGATGTC AACGATGGTTTTATGCTTGATGGTTTTCCTAGAAATATCGATCAAGCTAAGGCGCTAGATGAAATGACATCTCGTTTAAA CAAACCACTTACAGCAGTGATTAACATTCATGTTGATCCTGAAGTTTTGGTTGAAAGACTATCTGGCAGATTTATTTGTA AAAATTGTGGAGCTACTTATCATAAGCTTTACAATCCACCAAAGGTTGAAGGAACTTGTGATGTTTGCGGACATCACGAA TTCTTCCAACGTGAGGACGACAAGCCAGAAACTGTAAAAAATCGCATTGCTGTTAATACTAAACTTAACACTCCGTTGAT TTCTTACTATGAAGAAAAGCATCTCCTTTACAACATTAATGGCGATCAGGATATCAACGATGTTTATTCTGAAGTCAAAA AAGTATTAGAGGCTCTCTAA
Upstream 100 bases:
>100_bases TCGAGTTGGCAAATCAACTTGAAGGGTTAATGATGAAACGAGAATACGTTGGATTCATTCGAAAATAATTCGTTAGTTTA ACAATGAAGGAGAATTTCAA
Downstream 100 bases:
>100_bases TTTCGTGCTTGTTGGTACTATAGATAACGTTCATTGTTTGCAAATAGTTTTTTCGTATGGTAAGCTAATTCAGGTTTAGC TTCGAAATACATATTTTGAG
Product: adenylate kinase
Products: NA
Alternate protein names: AK; ATP-AMP transphosphorylase [H]
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MSKLNLVLMGLPGAGKGTQAQRIIEDFKIPHISTGDIFREAMKNETEMGVEAKKFIDKGELVPDSVTNGIVEDRLAMDDV NDGFMLDGFPRNIDQAKALDEMTSRLNKPLTAVINIHVDPEVLVERLSGRFICKNCGATYHKLYNPPKVEGTCDVCGHHE FFQREDDKPETVKNRIAVNTKLNTPLISYYEEKHLLYNINGDQDINDVYSEVKKVLEAL
Sequences:
>Translated_219_residues MSKLNLVLMGLPGAGKGTQAQRIIEDFKIPHISTGDIFREAMKNETEMGVEAKKFIDKGELVPDSVTNGIVEDRLAMDDV NDGFMLDGFPRNIDQAKALDEMTSRLNKPLTAVINIHVDPEVLVERLSGRFICKNCGATYHKLYNPPKVEGTCDVCGHHE FFQREDDKPETVKNRIAVNTKLNTPLISYYEEKHLLYNINGDQDINDVYSEVKKVLEAL >Mature_218_residues SKLNLVLMGLPGAGKGTQAQRIIEDFKIPHISTGDIFREAMKNETEMGVEAKKFIDKGELVPDSVTNGIVEDRLAMDDVN DGFMLDGFPRNIDQAKALDEMTSRLNKPLTAVINIHVDPEVLVERLSGRFICKNCGATYHKLYNPPKVEGTCDVCGHHEF FQREDDKPETVKNRIAVNTKLNTPLISYYEEKHLLYNINGDQDINDVYSEVKKVLEAL
Specific function: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth [H]
COG id: COG0563
COG function: function code F; Adenylate kinase and related kinases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the adenylate kinase family [H]
Homologues:
Organism=Homo sapiens, GI19923437, Length=219, Percent_Identity=39.2694063926941, Blast_Score=155, Evalue=2e-38, Organism=Homo sapiens, GI7524346, Length=209, Percent_Identity=34.9282296650718, Blast_Score=146, Evalue=1e-35, Organism=Homo sapiens, GI4502013, Length=209, Percent_Identity=34.9282296650718, Blast_Score=146, Evalue=1e-35, Organism=Homo sapiens, GI310110345, Length=213, Percent_Identity=37.5586854460094, Blast_Score=137, Evalue=6e-33, Organism=Homo sapiens, GI53832003, Length=213, Percent_Identity=37.5586854460094, Blast_Score=137, Evalue=6e-33, Organism=Homo sapiens, GI8051579, Length=213, Percent_Identity=37.5586854460094, Blast_Score=137, Evalue=6e-33, Organism=Homo sapiens, GI53832001, Length=213, Percent_Identity=37.5586854460094, Blast_Score=137, Evalue=6e-33, Organism=Homo sapiens, GI4502011, Length=215, Percent_Identity=27.4418604651163, Blast_Score=105, Evalue=2e-23, Organism=Homo sapiens, GI28144899, Length=216, Percent_Identity=24.537037037037, Blast_Score=88, Evalue=5e-18, Organism=Homo sapiens, GI28144897, Length=216, Percent_Identity=24.537037037037, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI7706497, Length=222, Percent_Identity=26.5765765765766, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI22749187, Length=209, Percent_Identity=27.7511961722488, Blast_Score=84, Evalue=8e-17, Organism=Escherichia coli, GI1786680, Length=218, Percent_Identity=40.3669724770642, Blast_Score=170, Evalue=8e-44, Organism=Caenorhabditis elegans, GI17552384, Length=213, Percent_Identity=32.8638497652582, Blast_Score=141, Evalue=3e-34, Organism=Caenorhabditis elegans, GI17537943, Length=215, Percent_Identity=32.5581395348837, Blast_Score=117, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17567503, Length=207, Percent_Identity=26.5700483091787, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17550688, Length=215, Percent_Identity=25.5813953488372, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17533833, Length=215, Percent_Identity=26.046511627907, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6320432, Length=210, Percent_Identity=38.0952380952381, Blast_Score=164, Evalue=1e-41, Organism=Saccharomyces cerevisiae, GI6321018, Length=197, Percent_Identity=35.5329949238579, Blast_Score=131, Evalue=9e-32, Organism=Saccharomyces cerevisiae, GI6322828, Length=217, Percent_Identity=26.7281105990783, Blast_Score=86, Evalue=4e-18, Organism=Drosophila melanogaster, GI22026816, Length=214, Percent_Identity=35.981308411215, Blast_Score=155, Evalue=2e-38, Organism=Drosophila melanogaster, GI17737899, Length=197, Percent_Identity=38.5786802030457, Blast_Score=137, Evalue=4e-33, Organism=Drosophila melanogaster, GI24645822, Length=197, Percent_Identity=38.5786802030457, Blast_Score=137, Evalue=4e-33, Organism=Drosophila melanogaster, GI221459597, Length=215, Percent_Identity=27.4418604651163, Blast_Score=87, Evalue=6e-18, Organism=Drosophila melanogaster, GI21356893, Length=215, Percent_Identity=27.4418604651163, Blast_Score=87, Evalue=6e-18,
Paralogues:
None
Copy number: 1640 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 847 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006259 - InterPro: IPR000850 - InterPro: IPR007862 - InterPro: IPR001878 [H]
Pfam domain/function: PF00406 ADK; PF05191 ADK_lid [H]
EC number: =2.7.4.3 [H]
Molecular weight: Translated: 24652; Mature: 24521
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS00113 ADENYLATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLNLVLMGLPGAGKGTQAQRIIEDFKIPHISTGDIFREAMKNETEMGVEAKKFIDKGE CCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCHHHHHHCCCC LVPDSVTNGIVEDRLAMDDVNDGFMLDGFPRNIDQAKALDEMTSRLNKPLTAVINIHVDP CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCH EVLVERLSGRFICKNCGATYHKLYNPPKVEGTCDVCGHHEFFQREDDKPETVKNRIAVNT HHHHHHHCCCEEEHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHEEEEC KLNTPLISYYEEKHLLYNINGDQDINDVYSEVKKVLEAL CCCCHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHC >Mature Secondary Structure SKLNLVLMGLPGAGKGTQAQRIIEDFKIPHISTGDIFREAMKNETEMGVEAKKFIDKGE CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCHHHHHHCCCC LVPDSVTNGIVEDRLAMDDVNDGFMLDGFPRNIDQAKALDEMTSRLNKPLTAVINIHVDP CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCH EVLVERLSGRFICKNCGATYHKLYNPPKVEGTCDVCGHHEFFQREDDKPETVKNRIAVNT HHHHHHHCCCEEEHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHEEEEC KLNTPLISYYEEKHLLYNINGDQDINDVYSEVKKVLEAL CCCCHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA