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The map label for this gene is infA

Identifier: 116493141

GI number: 116493141

Start: 1381620

End: 1381838

Strand: Reverse

Name: infA

Synonym: PEPE_1396

Alternate gene names: 116493141

Gene position: 1381838-1381620 (Counterclockwise)

Preceding gene: 116493142

Following gene: 116493140

Centisome position: 75.41

GC content: 38.81

Gene sequence:

>219_bases
GTGGCTAAAGATAATGTCATTGAAATTGAGGGCACAGTTAAAGAAACTATGCCTAATGCGATGTTCAAAGTAGAGCTTGA
AAATGGTCATGAAATTCTTGCTCATGTTTCGGGAAAGATTCGCATGCACTATATCAAAATTCTACCTGGCGATAAGGTTA
CGGTTGAAATGTCACCGTACGACTTGTCCAAAGGTCGCATTACCTATCGTTTCAAATAA

Upstream 100 bases:

>100_bases
TTCGTATGGTAAGCTAATTCAGGTTTAGCTTCGAAATACATATTTTGAGGCTTTTTGTTGGTTATTACTATTAGAAAAGT
TAATGGGAGGCACAAATTTA

Downstream 100 bases:

>100_bases
GTTTTATTCGTTTAGGAGGATTTATTCATGAAGGTACGTCCATCAGTTAAGACAATGTGTGAACATTGCAAAATCATTAG
ACGTAAAGGGCGCGTTATGG

Product: translation initiation factor IF-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MAKDNVIEIEGTVKETMPNAMFKVELENGHEILAHVSGKIRMHYIKILPGDKVTVEMSPYDLSKGRITYRFK

Sequences:

>Translated_72_residues
MAKDNVIEIEGTVKETMPNAMFKVELENGHEILAHVSGKIRMHYIKILPGDKVTVEMSPYDLSKGRITYRFK
>Mature_71_residues
AKDNVIEIEGTVKETMPNAMFKVELENGHEILAHVSGKIRMHYIKILPGDKVTVEMSPYDLSKGRITYRFK

Specific function: No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3

COG id: COG0361

COG function: function code J; Translation initiation factor 1 (IF-1)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1-like domain

Homologues:

Organism=Escherichia coli, GI1787110, Length=72, Percent_Identity=66.6666666666667, Blast_Score=108, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IF1_PEDPA (Q03ED8)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804876.1
- ProteinModelPortal:   Q03ED8
- SMR:   Q03ED8
- STRING:   Q03ED8
- GeneID:   4417814
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1396
- NMPDR:   fig|278197.10.peg.1229
- eggNOG:   COG0361
- HOGENOM:   HBG286099
- OMA:   KMRMHFI
- PhylomeDB:   Q03ED8
- ProtClustDB:   PRK00276
- BioCyc:   PPEN278197:PEPE_1396-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00075
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR022967
- InterPro:   IPR006196
- InterPro:   IPR004368
- Gene3D:   G3DSA:2.40.50.140
- SMART:   SM00316
- TIGRFAMs:   TIGR00008

Pfam domain/function: PF01176 eIF-1a; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 8250; Mature: 8119

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS50832 S1_IF1_TYPE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKDNVIEIEGTVKETMPNAMFKVELENGHEILAHVSGKIRMHYIKILPGDKVTVEMSPY
CCCCCEEEEECCCHHCCCCEEEEEEECCCCEEEEEECCEEEEEEEEEECCCEEEEEECCC
DLSKGRITYRFK
CCCCCEEEEEEC
>Mature Secondary Structure 
AKDNVIEIEGTVKETMPNAMFKVELENGHEILAHVSGKIRMHYIKILPGDKVTVEMSPY
CCCCEEEEECCCHHCCCCEEEEEEECCCCEEEEEECCEEEEEEEEEECCCEEEEEECCC
DLSKGRITYRFK
CCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA