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The map label for this gene is yqgF [C]

Identifier: 116493009

GI number: 116493009

Start: 1246840

End: 1247280

Strand: Reverse

Name: yqgF [C]

Synonym: PEPE_1261

Alternate gene names: 116493009

Gene position: 1247280-1246840 (Counterclockwise)

Preceding gene: 116493010

Following gene: 116493008

Centisome position: 68.07

GC content: 37.64

Gene sequence:

>441_bases
ATGAGATTAATGGGAATGGATGTCGGTTCAAGAACAGTCGGAATTTCAGTTAGTGATCAGTTAGGATGGACTGCTCAAGG
TGTCGAGATTGTTCCAATCAATGAAGATGAAGAAATCTTCGGGATTGAACGCGTTAAAGAATTAGTAAAAGAATATGATG
TTGTAGGTTTCGTATTAGGCTTGCCTAAAAATATGAATAACACTGAGGGACCAAGAGTTGAAGCAGCACGTAACTATGGT
AAGTTATTGGAAGAAACTTTTGGATTACCCATCGATTTTCAAGATGAACGGCTAACGACTGTGGAAGCTGAGCGCATGTT
GATTGAGCAAGCAGATACTTCTCGTTCAAAGCGAAAAAAAGTGATTGATAAATTAGCAGCTAGCCTGATTTTAGAAAACT
ACTTAAACGGACATGGAAAATTAATCGATAGATTAAAGTGA

Upstream 100 bases:

>100_bases
GTAATTTGATTCGGAAACATCAGCGCGATGAGATTATCGAAGAACTCGTTCGATACTATCTATCTGAACAAATCGCTGAT
AGCAAAAAGGAAGAAAATTA

Downstream 100 bases:

>100_bases
GGACAAGCATATGGATAACGAAGAACAAAAAATTACACTTGTTGACGAACACGGAAATGAAGAATTGTATAACGTACTAT
TTACGTTTGATTCAGAGGAC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MRLMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLGLPKNMNNTEGPRVEAARNYG
KLLEETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKKVIDKLAASLILENYLNGHGKLIDRLK

Sequences:

>Translated_146_residues
MRLMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLGLPKNMNNTEGPRVEAARNYG
KLLEETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKKVIDKLAASLILENYLNGHGKLIDRLK
>Mature_146_residues
MRLMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLGLPKNMNNTEGPRVEAARNYG
KLLEETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKKVIDKLAASLILENYLNGHGKLIDRLK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=31.5789473684211, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_PEDPA (Q03ES0)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804744.1
- ProteinModelPortal:   Q03ES0
- SMR:   Q03ES0
- STRING:   Q03ES0
- GeneID:   4417121
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1261
- NMPDR:   fig|278197.10.peg.1102
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q03ES0
- ProtClustDB:   PRK00109
- BioCyc:   PPEN278197:PEPE_1261-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16421; Mature: 16421

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLG
CEEECCCCCCEEEEEEECCCCCCEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEC
LPKNMNNTEGPRVEAARNYGKLLEETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKK
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
VIDKLAASLILENYLNGHGKLIDRLK
HHHHHHHHHHHHHHHCCCHHHHHHCC
>Mature Secondary Structure
MRLMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLG
CEEECCCCCCEEEEEEECCCCCCEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEC
LPKNMNNTEGPRVEAARNYGKLLEETFGLPIDFQDERLTTVEAERMLIEQADTSRSKRKK
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
VIDKLAASLILENYLNGHGKLIDRLK
HHHHHHHHHHHHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA