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The map label for this gene is yqeN [H]

Identifier: 116492909

GI number: 116492909

Start: 1147476

End: 1148495

Strand: Reverse

Name: yqeN [H]

Synonym: PEPE_1148

Alternate gene names: 116492909

Gene position: 1148495-1147476 (Counterclockwise)

Preceding gene: 116492910

Following gene: 116492907

Centisome position: 62.68

GC content: 33.53

Gene sequence:

>1020_bases
ATGAAATTAACTGATTTAAGAAAAAAACTTAAACAAGGGCAATTGAAGTCAATCTATTTGGTTGAAGGTCCTGATAACTA
TATCCAGAAAGCGGTCAAAAAAGAATTAATTGATTTCATTCCTGAAGATCAAAGGGTAATGAACGTAGGAACGTATGACC
TTGAAAATGTGGACTTAGGGATGGTCTTAGATGATGCACAGTCTGCCCCTTTTTTTGGCGATTATCGTTTGGTCATTTTA
AATAACCCTGTATTCTTGACTGGTGAAAAAACTAAATTAAAGTTTAACTTGGACGGGTTGCTTAGCTATATTAAAAATCC
GGAACCTACTACAATTATGTTAATCGCTGCAAAATATGAAAAACTCGATGGTCGGAAGAAAATTGTCAAAGACTTAAAAA
AGATTGTAGAAGTTATCGATGCTAATTCACCGAAAGAAAGCGATACTCGGAAGATTATCCAGCAATACGTTGATGAGAAA
CGAACAGAAATTGACAGTGATGCGTTAGATGAATTAATTTTAAGGACGGATAATGATTTAGCACAAATTATTAATGAATT
ACAGAAATTAACTGTATATGCATCGGGAACAGAGAAAATTGATTTGAATGCCGTTCAAAAATTAGTTCCTAAGGGCTTAA
ATCAAAATGTTTTTGATCTAATCAATGTATTAATGCAAGGAAATTTACGTAAATCAATCGATGATTATTCTGTATTACTC
CTAAATCAAGAACAGCCACTAAGAATAAATGCGGCTTTGGTTAGCCAATTTCGATTGTTGCTGCAAGTTAAAATATTGAT
GGAGAGAGGTTTCTCACAAGGAAAACTAGCACAAGAGTTAAAGGCCCATCCTTACCGAATTAAGTTAGCAATGCAATCTG
TGCGTCAGTTTAATATTCAAAGTCTCGAAAATGCTTATATCGGGTTGGTTGATTTAGAAGAACAATTAAAAACAACCCAA
CGAGATCCGAAGGAACTCTTTGAGTTGTTCTTAGTTAAATTTAAAAATGGATGGAAATAA

Upstream 100 bases:

>100_bases
ACGCTTCGACACAGGATGAAGGAATGATTTCTTATAGATATTTTTTGAATGGTATGGGAAGATGGAAGACAGGAATAGAT
GAAAAGGAAAGTATTATTCA

Downstream 100 bases:

>100_bases
AAAACACCGGAAATCCGGTGTTTTTTTATTTGCTAAGCATTTTAGCTAAACGTGACTTCTTACGGCCGGCGTTATTAGCT
TTAATTAAACCTTTTGACTT

Product: DNA polymerase III, delta subunit

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKLTDLRKKLKQGQLKSIYLVEGPDNYIQKAVKKELIDFIPEDQRVMNVGTYDLENVDLGMVLDDAQSAPFFGDYRLVIL
NNPVFLTGEKTKLKFNLDGLLSYIKNPEPTTIMLIAAKYEKLDGRKKIVKDLKKIVEVIDANSPKESDTRKIIQQYVDEK
RTEIDSDALDELILRTDNDLAQIINELQKLTVYASGTEKIDLNAVQKLVPKGLNQNVFDLINVLMQGNLRKSIDDYSVLL
LNQEQPLRINAALVSQFRLLLQVKILMERGFSQGKLAQELKAHPYRIKLAMQSVRQFNIQSLENAYIGLVDLEEQLKTTQ
RDPKELFELFLVKFKNGWK

Sequences:

>Translated_339_residues
MKLTDLRKKLKQGQLKSIYLVEGPDNYIQKAVKKELIDFIPEDQRVMNVGTYDLENVDLGMVLDDAQSAPFFGDYRLVIL
NNPVFLTGEKTKLKFNLDGLLSYIKNPEPTTIMLIAAKYEKLDGRKKIVKDLKKIVEVIDANSPKESDTRKIIQQYVDEK
RTEIDSDALDELILRTDNDLAQIINELQKLTVYASGTEKIDLNAVQKLVPKGLNQNVFDLINVLMQGNLRKSIDDYSVLL
LNQEQPLRINAALVSQFRLLLQVKILMERGFSQGKLAQELKAHPYRIKLAMQSVRQFNIQSLENAYIGLVDLEEQLKTTQ
RDPKELFELFLVKFKNGWK
>Mature_339_residues
MKLTDLRKKLKQGQLKSIYLVEGPDNYIQKAVKKELIDFIPEDQRVMNVGTYDLENVDLGMVLDDAQSAPFFGDYRLVIL
NNPVFLTGEKTKLKFNLDGLLSYIKNPEPTTIMLIAAKYEKLDGRKKIVKDLKKIVEVIDANSPKESDTRKIIQQYVDEK
RTEIDSDALDELILRTDNDLAQIINELQKLTVYASGTEKIDLNAVQKLVPKGLNQNVFDLINVLMQGNLRKSIDDYSVLL
LNQEQPLRINAALVSQFRLLLQVKILMERGFSQGKLAQELKAHPYRIKLAMQSVRQFNIQSLENAYIGLVDLEEQLKTTQ
RDPKELFELFLVKFKNGWK

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008921
- InterPro:   IPR010372
- InterPro:   IPR005790 [H]

Pfam domain/function: PF06144 DNA_pol3_delta [H]

EC number: 2.7.7.7

Molecular weight: Translated: 38959; Mature: 38959

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTDLRKKLKQGQLKSIYLVEGPDNYIQKAVKKELIDFIPEDQRVMNVGTYDLENVDLG
CCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEE
MVLDDAQSAPFFGDYRLVILNNPVFLTGEKTKLKFNLDGLLSYIKNPEPTTIMLIAAKYE
EEEECCCCCCCCCCEEEEEECCCEEEECCCEEEEEEHHHHHHHHCCCCCCEEEEEEEHHH
KLDGRKKIVKDLKKIVEVIDANSPKESDTRKIIQQYVDEKRTEIDSDALDELILRTDNDL
HCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHH
AQIINELQKLTVYASGTEKIDLNAVQKLVPKGLNQNVFDLINVLMQGNLRKSIDDYSVLL
HHHHHHHHHEEEEECCCCEECHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHCCCCEEEEE
LNQEQPLRINAALVSQFRLLLQVKILMERGFSQGKLAQELKAHPYRIKLAMQSVRQFNIQ
ECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHH
SLENAYIGLVDLEEQLKTTQRDPKELFELFLVKFKNGWK
HHHCHHEEEEEHHHHHHHHCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKLTDLRKKLKQGQLKSIYLVEGPDNYIQKAVKKELIDFIPEDQRVMNVGTYDLENVDLG
CCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEE
MVLDDAQSAPFFGDYRLVILNNPVFLTGEKTKLKFNLDGLLSYIKNPEPTTIMLIAAKYE
EEEECCCCCCCCCCEEEEEECCCEEEECCCEEEEEEHHHHHHHHCCCCCCEEEEEEEHHH
KLDGRKKIVKDLKKIVEVIDANSPKESDTRKIIQQYVDEKRTEIDSDALDELILRTDNDL
HCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHH
AQIINELQKLTVYASGTEKIDLNAVQKLVPKGLNQNVFDLINVLMQGNLRKSIDDYSVLL
HHHHHHHHHEEEEECCCCEECHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHCCCCEEEEE
LNQEQPLRINAALVSQFRLLLQVKILMERGFSQGKLAQELKAHPYRIKLAMQSVRQFNIQ
ECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHH
SLENAYIGLVDLEEQLKTTQRDPKELFELFLVKFKNGWK
HHHCHHEEEEEHHHHHHHHCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]