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The map label for this gene is 116492906

Identifier: 116492906

GI number: 116492906

Start: 1144884

End: 1146641

Strand: Reverse

Name: 116492906

Synonym: PEPE_1145

Alternate gene names: NA

Gene position: 1146641-1144884 (Counterclockwise)

Preceding gene: 116492907

Following gene: 116492905

Centisome position: 62.58

GC content: 35.38

Gene sequence:

>1758_bases
ATGTATTGTGCGGAAAATAAAAAATTAATTTATGTAGGTGAAAAAATGAGTGACACAATAAAAATAATTCCATTTGGCGG
TGTTCGCGAAAATGGAAAGAATATGTATGCTGTTCAAATTCATGATGATATTTATATCTTGGATTGTGGACTAAAATACC
CGGAAAATGAATTGCTGGGTATTGATATTGTAATCCCAGATATTTCATATTTGGTTGAAAATAAAGAAAAAATTGTGGGT
GTATTCCTAACTCACGGGCATGCTGATGCGATTGGTGCTTTGCCATATTTCTTAAAAGAAATTAATGTACCGGTTTTTGG
TTCAGAAATGACCATTGCCTTGGCTAAAATTACGGTTAATGATGACCCTGAACTTAAAGCATTCGATAATTTCCATGTGG
TAGATGACAAGAAAGAAATTGATTTTGGCGACGTTACTGTTTCGTTTTTTAAGACTACGCATACAATTCCTGAATCACTT
GGAATTGTGTTGAGTTGTACGGAAGGACAAATTGTATATACTGGTGATTTTAAATTTGATCAAACGGCTACTGATGGATA
TCAGACAGATTTCGGACGGCTAGCACAAATTGGAAGTAAAAAAGTTATCGCGCTTTTAAGTGATTCTGCTAACGCCGAAA
ATCCAGAACGTTCATCTAATGAAACTGATATTGCTGATGTAATGGCTGAGACAATTAAATACCATGAAGGTCGGGTAATT
GTAGCTTCAGTGGCTTCGAATATTTTACGGATTCAACAGGTGATTGACGCTGCAGCTAAATCAGATAAAAAAGTCGTTTT
AACGGGACATGATTTAGAGAAGATTGTTAACACAGCTATCGAGTTAAATAAATTAAACATTCCAGACGACGAATTAATTG
TTCCTTTAAACCAACTAGATAAGTTGAAACCAGAAGAAACGATTATTTTGGAAACTGGTAAATTGGGTGAACCCATCAAA
GCCTTACAAAAAATGGCCGCTAGGAAAAAGGGAAACCTTAAGATTCAACCAGGTGATTTGGTAGTAATAGCTACTAATCC
TTCCCATGCGATGGAAACAACGTTTGCTAAGACTAAAGATATGTTGTATCGTGCTGGAGCCGAAGTTAAGTCGATTTCAG
ACCGAGCTAATGCTACAGGTCATGCTAGCAAAGATGATTTACAGTTAATGCTTAATTTAATTAAGCCAGAATTTCTAATT
CCGATTCAAGGCGAATACCGTCTTTTAGTAGCTCATAAAGAACTTGCAGAACAAGTTGGTCTCAATGAAAATCAAATTTT
CATTGCTTCAAAGGGTGATGTTTTAGAATATAAAGATGGTGAAATGTTCCTAGGTAAAGGAATTACGGTCGGAAATACAA
TGATTGATGGAATTGGTGTAGGGGACATTGGTAACATTGTTCTTCGAGATCGTAAAATTTTATCTGAAGATGGGGTTTTC
ATTGCGGTAGTGACAATTGACCGTAAGAAGAAAATCATTATTAAGGAACCTAAAATTACGTCTAGAGGGTTTGTTTACGC
TAAAACAAGTGTAGATTTAATTCAAGAAAGTTCGGACTTGGTTGAACGAGCAGTGCAAGCTAATCTAGATAATAAAGAAT
TCGATTGGGGACATTTGAAGCAAGATGTACGTGACCAATTGGGCAAATTCTTATACGATAAAACGAAACGACGTCCAGTA
ATTTTACCAGTAATTATGGAAGTAAACCAACATCATAAGAAGAGCAAAAAATCGAATAAATCTAAAGACGATGAATAA

Upstream 100 bases:

>100_bases
AGTCTTGGTCTTCGTCGTTAATATTATATTTTTTTGCCTCCTGTTAATTCAGGAGGCTTTTTTGTTTTTGGCGTTTAATC
TATGCTAGAATTAGGGGAGT

Downstream 100 bases:

>100_bases
TATGAATGTAATTAGCAAAGCAAATGAAGCTTGGAAAACAGGTCAACGTGCAGAAGCTATTCATATTCTTGAAACTGAGA
ATGAATTAAAACAAGATGAT

Product: metallo-beta-lactamase superfamily hydrolase

Products: NA

Alternate protein names: RNase J2 [H]

Number of amino acids: Translated: 585; Mature: 585

Protein sequence:

>585_residues
MYCAENKKLIYVGEKMSDTIKIIPFGGVRENGKNMYAVQIHDDIYILDCGLKYPENELLGIDIVIPDISYLVENKEKIVG
VFLTHGHADAIGALPYFLKEINVPVFGSEMTIALAKITVNDDPELKAFDNFHVVDDKKEIDFGDVTVSFFKTTHTIPESL
GIVLSCTEGQIVYTGDFKFDQTATDGYQTDFGRLAQIGSKKVIALLSDSANAENPERSSNETDIADVMAETIKYHEGRVI
VASVASNILRIQQVIDAAAKSDKKVVLTGHDLEKIVNTAIELNKLNIPDDELIVPLNQLDKLKPEETIILETGKLGEPIK
ALQKMAARKKGNLKIQPGDLVVIATNPSHAMETTFAKTKDMLYRAGAEVKSISDRANATGHASKDDLQLMLNLIKPEFLI
PIQGEYRLLVAHKELAEQVGLNENQIFIASKGDVLEYKDGEMFLGKGITVGNTMIDGIGVGDIGNIVLRDRKILSEDGVF
IAVVTIDRKKKIIIKEPKITSRGFVYAKTSVDLIQESSDLVERAVQANLDNKEFDWGHLKQDVRDQLGKFLYDKTKRRPV
ILPVIMEVNQHHKKSKKSNKSKDDE

Sequences:

>Translated_585_residues
MYCAENKKLIYVGEKMSDTIKIIPFGGVRENGKNMYAVQIHDDIYILDCGLKYPENELLGIDIVIPDISYLVENKEKIVG
VFLTHGHADAIGALPYFLKEINVPVFGSEMTIALAKITVNDDPELKAFDNFHVVDDKKEIDFGDVTVSFFKTTHTIPESL
GIVLSCTEGQIVYTGDFKFDQTATDGYQTDFGRLAQIGSKKVIALLSDSANAENPERSSNETDIADVMAETIKYHEGRVI
VASVASNILRIQQVIDAAAKSDKKVVLTGHDLEKIVNTAIELNKLNIPDDELIVPLNQLDKLKPEETIILETGKLGEPIK
ALQKMAARKKGNLKIQPGDLVVIATNPSHAMETTFAKTKDMLYRAGAEVKSISDRANATGHASKDDLQLMLNLIKPEFLI
PIQGEYRLLVAHKELAEQVGLNENQIFIASKGDVLEYKDGEMFLGKGITVGNTMIDGIGVGDIGNIVLRDRKILSEDGVF
IAVVTIDRKKKIIIKEPKITSRGFVYAKTSVDLIQESSDLVERAVQANLDNKEFDWGHLKQDVRDQLGKFLYDKTKRRPV
ILPVIMEVNQHHKKSKKSNKSKDDE
>Mature_585_residues
MYCAENKKLIYVGEKMSDTIKIIPFGGVRENGKNMYAVQIHDDIYILDCGLKYPENELLGIDIVIPDISYLVENKEKIVG
VFLTHGHADAIGALPYFLKEINVPVFGSEMTIALAKITVNDDPELKAFDNFHVVDDKKEIDFGDVTVSFFKTTHTIPESL
GIVLSCTEGQIVYTGDFKFDQTATDGYQTDFGRLAQIGSKKVIALLSDSANAENPERSSNETDIADVMAETIKYHEGRVI
VASVASNILRIQQVIDAAAKSDKKVVLTGHDLEKIVNTAIELNKLNIPDDELIVPLNQLDKLKPEETIILETGKLGEPIK
ALQKMAARKKGNLKIQPGDLVVIATNPSHAMETTFAKTKDMLYRAGAEVKSISDRANATGHASKDDLQLMLNLIKPEFLI
PIQGEYRLLVAHKELAEQVGLNENQIFIASKGDVLEYKDGEMFLGKGITVGNTMIDGIGVGDIGNIVLRDRKILSEDGVF
IAVVTIDRKKKIIIKEPKITSRGFVYAKTSVDLIQESSDLVERAVQANLDNKEFDWGHLKQDVRDQLGKFLYDKTKRRPV
ILPVIMEVNQHHKKSKKSNKSKDDE

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 64978; Mature: 64978

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYCAENKKLIYVGEKMSDTIKIIPFGGVRENGKNMYAVQIHDDIYILDCGLKYPENELLG
CCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCEEE
IDIVIPDISYLVENKEKIVGVFLTHGHADAIGALPYFLKEINVPVFGSEMTIALAKITVN
EEEEECCHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEECCCEEEEEEEEEEC
DDPELKAFDNFHVVDDKKEIDFGDVTVSFFKTTHTIPESLGIVLSCTEGQIVYTGDFKFD
CCCCCEECCCEEEECCCCCCCCCCEEEEEEEHHCCCCCCCCEEEEECCCCEEEECCCCCC
QTATDGYQTDFGRLAQIGSKKVIALLSDSANAENPERSSNETDIADVMAETIKYHEGRVI
CCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
VASVASNILRIQQVIDAAAKSDKKVVLTGHDLEKIVNTAIELNKLNIPDDELIVPLNQLD
EHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHEEEEECCCCCCCEEEEHHHHC
KLKPEETIILETGKLGEPIKALQKMAARKKGNLKIQPGDLVVIATNPSHAMETTFAKTKD
CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCEEEEEECCCHHHHHHHHHHHH
MLYRAGAEVKSISDRANATGHASKDDLQLMLNLIKPEFLIPIQGEYRLLVAHKELAEQVG
HHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCEEEEEEEHHHHHHHC
LNENQIFIASKGDVLEYKDGEMFLGKGITVGNTMIDGIGVGDIGNIVLRDRKILSEDGVF
CCCCEEEEEECCCEEEECCCCEEEECCEEECCEEECCCCCCCCCCEEEECCHHHCCCCEE
IAVVTIDRKKKIIIKEPKITSRGFVYAKTSVDLIQESSDLVERAVQANLDNKEFDWGHLK
EEEEEECCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
QDVRDQLGKFLYDKTKRRPVILPVIMEVNQHHKKSKKSNKSKDDE
HHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MYCAENKKLIYVGEKMSDTIKIIPFGGVRENGKNMYAVQIHDDIYILDCGLKYPENELLG
CCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCEEE
IDIVIPDISYLVENKEKIVGVFLTHGHADAIGALPYFLKEINVPVFGSEMTIALAKITVN
EEEEECCHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEECCCEEEEEEEEEEC
DDPELKAFDNFHVVDDKKEIDFGDVTVSFFKTTHTIPESLGIVLSCTEGQIVYTGDFKFD
CCCCCEECCCEEEECCCCCCCCCCEEEEEEEHHCCCCCCCCEEEEECCCCEEEECCCCCC
QTATDGYQTDFGRLAQIGSKKVIALLSDSANAENPERSSNETDIADVMAETIKYHEGRVI
CCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
VASVASNILRIQQVIDAAAKSDKKVVLTGHDLEKIVNTAIELNKLNIPDDELIVPLNQLD
EHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHEEEEECCCCCCCEEEEHHHHC
KLKPEETIILETGKLGEPIKALQKMAARKKGNLKIQPGDLVVIATNPSHAMETTFAKTKD
CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCEEEEEECCCHHHHHHHHHHHH
MLYRAGAEVKSISDRANATGHASKDDLQLMLNLIKPEFLIPIQGEYRLLVAHKELAEQVG
HHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCEEEEEEEHHHHHHHC
LNENQIFIASKGDVLEYKDGEMFLGKGITVGNTMIDGIGVGDIGNIVLRDRKILSEDGVF
CCCCEEEEEECCCEEEECCCCEEEECCEEECCEEECCCCCCCCCCEEEECCHHHCCCCEE
IAVVTIDRKKKIIIKEPKITSRGFVYAKTSVDLIQESSDLVERAVQANLDNKEFDWGHLK
EEEEEECCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
QDVRDQLGKFLYDKTKRRPVILPVIMEVNQHHKKSKKSNKSKDDE
HHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA