| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is 116492799
Identifier: 116492799
GI number: 116492799
Start: 1028279
End: 1029406
Strand: Direct
Name: 116492799
Synonym: PEPE_1036
Alternate gene names: NA
Gene position: 1028279-1029406 (Clockwise)
Preceding gene: 116492798
Following gene: 116492800
Centisome position: 56.12
GC content: 36.17
Gene sequence:
>1128_bases ATGAAAAAAGTGTTAACACTTGGTGTTATCGCCATTTCTTCATTAGCGCTTGTGGCTTGTGGAAATAATAACAAAGCAGA TAAAGACTCTTCATCAGTTGAAAGCATATCAAAAAAGATTGATTCTGGTGACGATAATACAAGTAATGACGATCAGCAAG TTTATGCTAAAAAAAATAAGATTGTCAATCCTGATAAAGGAACTATGGAAATTTTAGGATTTAAACAACTTTCTTATAAA GGTAAACCGGCATTTGCCGTAGAATGGAAATTCACTAATACCTCTAAAAAACAACTGACTGCAGATGCTATTGATGAAGC TACTCATACATACTTCCAAAAGAACGGAAACAGTGAGCAGTCTATATCAAGTGAAGACGTTTATATTCTAAGTGCAGACC AAGCCAATTACAATTCAGTTGATGATGACGACGATGATGCTTATAACCAAGCGATAGCTAATTACAATGCTTGGGGCACT GAATCTGATAGATCCAGCGAAGACAAGATAGAACCTGGAAAATCTATTAATTTACTGGGTGGAGAATTAATAGTCCCTGT ATCAAAAGAAGATGTTAAAGTTCAAATTGGTAATCATGATGAAGCTGATACCGATGTAGATATGAGTAAAGACAACTTCA TTATCAAGTACAATGAACTTAGTTCAAAACATTTTACTAATGATTTAGTTGAAGAATTAAAAAAGGCTTATGCAAATGAA ACTAGTGATCAGTTGTCTCAAAAAGATGAAAATTCAAGTGATTCTAATTCACAGTCTCAGGGTAGCACTAATGAAAAAGT TAGTAATAAAAATAAAAATATGGGTGCAACACAACAAAAAACTCAAGGAGAAAAAAACAGAGAACAGGGTTACGACCCTA AGGGTAATAAAGTAATGCCTGGTCAAGACCATGCACCAGGCAGTAATGTATATGGAAATGAAGACGACTGGGTAAAAGGA CAAGATCAAGATAACGGAACAGACAGCCCTACTCAATCGGCAATGGACGATCCAAATAGTGATGAGAATAAGGCAGCTCA TGCTAAAGGTGGCATGATGTACGGTGCTCCAGACAACGTTACCGAAGGAGACTGGCAACGTTCCGAAGATGCTGCTAACA CCAAATAA
Upstream 100 bases:
>100_bases GATAGATAATGTATTTGAGGAAAAAATAGGTATTTAATTAGTCTTACGTCCAAATACTGATTGACGTTAAAAGCTGTACA TATTTTTGGAGGTAATCAGA
Downstream 100 bases:
>100_bases AAAAGCCACATCCCCTAACCGCCAAGTAAGATGTTAGAACGTGATTGGCCGATCATTGCAGCTAACATCCCTGGTATTTT CTTAGGATTTTTTACATTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 375; Mature: 375
Protein sequence:
>375_residues MKKVLTLGVIAISSLALVACGNNNKADKDSSSVESISKKIDSGDDNTSNDDQQVYAKKNKIVNPDKGTMEILGFKQLSYK GKPAFAVEWKFTNTSKKQLTADAIDEATHTYFQKNGNSEQSISSEDVYILSADQANYNSVDDDDDDAYNQAIANYNAWGT ESDRSSEDKIEPGKSINLLGGELIVPVSKEDVKVQIGNHDEADTDVDMSKDNFIIKYNELSSKHFTNDLVEELKKAYANE TSDQLSQKDENSSDSNSQSQGSTNEKVSNKNKNMGATQQKTQGEKNREQGYDPKGNKVMPGQDHAPGSNVYGNEDDWVKG QDQDNGTDSPTQSAMDDPNSDENKAAHAKGGMMYGAPDNVTEGDWQRSEDAANTK
Sequences:
>Translated_375_residues MKKVLTLGVIAISSLALVACGNNNKADKDSSSVESISKKIDSGDDNTSNDDQQVYAKKNKIVNPDKGTMEILGFKQLSYK GKPAFAVEWKFTNTSKKQLTADAIDEATHTYFQKNGNSEQSISSEDVYILSADQANYNSVDDDDDDAYNQAIANYNAWGT ESDRSSEDKIEPGKSINLLGGELIVPVSKEDVKVQIGNHDEADTDVDMSKDNFIIKYNELSSKHFTNDLVEELKKAYANE TSDQLSQKDENSSDSNSQSQGSTNEKVSNKNKNMGATQQKTQGEKNREQGYDPKGNKVMPGQDHAPGSNVYGNEDDWVKG QDQDNGTDSPTQSAMDDPNSDENKAAHAKGGMMYGAPDNVTEGDWQRSEDAANTK >Mature_375_residues MKKVLTLGVIAISSLALVACGNNNKADKDSSSVESISKKIDSGDDNTSNDDQQVYAKKNKIVNPDKGTMEILGFKQLSYK GKPAFAVEWKFTNTSKKQLTADAIDEATHTYFQKNGNSEQSISSEDVYILSADQANYNSVDDDDDDAYNQAIANYNAWGT ESDRSSEDKIEPGKSINLLGGELIVPVSKEDVKVQIGNHDEADTDVDMSKDNFIIKYNELSSKHFTNDLVEELKKAYANE TSDQLSQKDENSSDSNSQSQGSTNEKVSNKNKNMGATQQKTQGEKNREQGYDPKGNKVMPGQDHAPGSNVYGNEDDWVKG QDQDNGTDSPTQSAMDDPNSDENKAAHAKGGMMYGAPDNVTEGDWQRSEDAANTK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41008; Mature: 41008
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVLTLGVIAISSLALVACGNNNKADKDSSSVESISKKIDSGDDNTSNDDQQVYAKKNK CCCHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC IVNPDKGTMEILGFKQLSYKGKPAFAVEWKFTNTSKKQLTADAIDEATHTYFQKNGNSEQ CCCCCCCCEEEEEHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC SISSEDVYILSADQANYNSVDDDDDDAYNQAIANYNAWGTESDRSSEDKIEPGKSINLLG CCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEC GELIVPVSKEDVKVQIGNHDEADTDVDMSKDNFIIKYNELSSKHFTNDLVEELKKAYANE CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC TSDQLSQKDENSSDSNSQSQGSTNEKVSNKNKNMGATQQKTQGEKNREQGYDPKGNKVMP HHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHCCCHHHHCCCCCCCCEECC GQDHAPGSNVYGNEDDWVKGQDQDNGTDSPTQSAMDDPNSDENKAAHAKGGMMYGAPDNV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHCCCEEECCCCCC TEGDWQRSEDAANTK CCCCCCCCCCCCCCC >Mature Secondary Structure MKKVLTLGVIAISSLALVACGNNNKADKDSSSVESISKKIDSGDDNTSNDDQQVYAKKNK CCCHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC IVNPDKGTMEILGFKQLSYKGKPAFAVEWKFTNTSKKQLTADAIDEATHTYFQKNGNSEQ CCCCCCCCEEEEEHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC SISSEDVYILSADQANYNSVDDDDDDAYNQAIANYNAWGTESDRSSEDKIEPGKSINLLG CCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEC GELIVPVSKEDVKVQIGNHDEADTDVDMSKDNFIIKYNELSSKHFTNDLVEELKKAYANE CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC TSDQLSQKDENSSDSNSQSQGSTNEKVSNKNKNMGATQQKTQGEKNREQGYDPKGNKVMP HHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHCCCHHHHCCCCCCCCEECC GQDHAPGSNVYGNEDDWVKGQDQDNGTDSPTQSAMDDPNSDENKAAHAKGGMMYGAPDNV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHCCCEEECCCCCC TEGDWQRSEDAANTK CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA