| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is lldD [C]
Identifier: 116492687
GI number: 116492687
Start: 922326
End: 923435
Strand: Direct
Name: lldD [C]
Synonym: PEPE_0922
Alternate gene names: 116492687
Gene position: 922326-923435 (Clockwise)
Preceding gene: 116492685
Following gene: 116492688
Centisome position: 50.33
GC content: 40.0
Gene sequence:
>1110_bases ATGACAATGATTAATGGTTATGAACAAAGTGATCGTGAAGAAAAAATTGACATTTTAAATTTGGAGTCTTTGGAAGAAAG AGCCGAAAAGATTATTCCAACTGGTGGGTTTGGATATATCTCTGGTGGTTCTGAAGATGAATGGACTCTCCGACAAAATC GAACTGCATTCCAGCATCGACAAATCGCGCCCAAAGCTTTGAGTGGAATTGAAAAACCAGAACTAAATACAGAAATCTTT GGAATTCCATTGAATACTCCAGTGATGATGGCGCCAGCTGCAGCTCAAGGCTTAGCACATTCACAAGGTGAAAAAGATAC AGCTAGAGGTCTTGCCGCAGTAGGAGGCTTAATGGCACAAAGCACATATTCATCAGTTTCTATTGCTGATACGGCAGCTG CTGGTGAAGGTGCTCCTCAATTTTTCCAGCTTTACATGAGTAAGGACTGGAATTTTAATGAGAGCTTGCTAGATGAGGCT AAAAAAGCTCATGTTAAAGCAATTATTTTGACCGTAGATGCCACTGTTGATGGTTATCGAGAAGCTGATATTAAAAATAA GTTTGCATTTCCACTTCCAATGGCTAACTTAACTAAGTTTTCCGAGGGTGATGGTCAAGGAAAAGGAATTGAAGAAATCT ACGCTTCTGCAGCTCAAAATATAAGACCGGAAGATGTTAGAAGAATTGCTGATTACACACAATTACCCGTAATTGTTAAA GGAATTCAAACTCCTGAGGATGCTATTCGAGCAATTGATGCTGGGGCAGCCGGCATTTATGTATCAAACCATGGAGGTCG TCAGCTAAACGGGGGACCTGGATCTTTTGATGTTTTGGAAGATATCGCTACCTCCGTTAATAAGCAGGTGCCAATTATCT TTGATAGTGGTGTACGTCGTGGTTCAGATGTATTTAAAGCTTTGGCTAGTGGCGCAGACATCGTGGCTTTGGGTCGTCCA GTAATTTATGGATTAGCTTTAGGTGGTGCCAAAGGGGTTCAATCTGTATTTGAACATATAGACCATGAACTTGAAATTGT GATGCAACTAGCAGGTACTAAAACCATTGATGATATTAAAAATAACCCACTACTAAACATCAAATATTAA
Upstream 100 bases:
>100_bases ATAGCAAGTAGAAATCTGTTACTATTCTGTTCTTTGCTATCAGTAAATTTTAGAATAGTTAATCTTAAAATTAGTAGTGA TTTGGATGGGGGCATATATT
Downstream 100 bases:
>100_bases TTGATAAAATCCTCCAATTCTGGGGGATTTTTTAGATATCGAGGAACTTTTTTGATATGTCGGCTACTAGATACTGATGG GTATTTATTGACTTAATAGA
Product: L-lactate dehydrogenase (FMN-dependent) related alpha-hydroxy acid dehydrogenase
Products: NA
Alternate protein names: Lactate oxidase [H]
Number of amino acids: Translated: 369; Mature: 368
Protein sequence:
>369_residues MTMINGYEQSDREEKIDILNLESLEERAEKIIPTGGFGYISGGSEDEWTLRQNRTAFQHRQIAPKALSGIEKPELNTEIF GIPLNTPVMMAPAAAQGLAHSQGEKDTARGLAAVGGLMAQSTYSSVSIADTAAAGEGAPQFFQLYMSKDWNFNESLLDEA KKAHVKAIILTVDATVDGYREADIKNKFAFPLPMANLTKFSEGDGQGKGIEEIYASAAQNIRPEDVRRIADYTQLPVIVK GIQTPEDAIRAIDAGAAGIYVSNHGGRQLNGGPGSFDVLEDIATSVNKQVPIIFDSGVRRGSDVFKALASGADIVALGRP VIYGLALGGAKGVQSVFEHIDHELEIVMQLAGTKTIDDIKNNPLLNIKY
Sequences:
>Translated_369_residues MTMINGYEQSDREEKIDILNLESLEERAEKIIPTGGFGYISGGSEDEWTLRQNRTAFQHRQIAPKALSGIEKPELNTEIF GIPLNTPVMMAPAAAQGLAHSQGEKDTARGLAAVGGLMAQSTYSSVSIADTAAAGEGAPQFFQLYMSKDWNFNESLLDEA KKAHVKAIILTVDATVDGYREADIKNKFAFPLPMANLTKFSEGDGQGKGIEEIYASAAQNIRPEDVRRIADYTQLPVIVK GIQTPEDAIRAIDAGAAGIYVSNHGGRQLNGGPGSFDVLEDIATSVNKQVPIIFDSGVRRGSDVFKALASGADIVALGRP VIYGLALGGAKGVQSVFEHIDHELEIVMQLAGTKTIDDIKNNPLLNIKY >Mature_368_residues TMINGYEQSDREEKIDILNLESLEERAEKIIPTGGFGYISGGSEDEWTLRQNRTAFQHRQIAPKALSGIEKPELNTEIFG IPLNTPVMMAPAAAQGLAHSQGEKDTARGLAAVGGLMAQSTYSSVSIADTAAAGEGAPQFFQLYMSKDWNFNESLLDEAK KAHVKAIILTVDATVDGYREADIKNKFAFPLPMANLTKFSEGDGQGKGIEEIYASAAQNIRPEDVRRIADYTQLPVIVKG IQTPEDAIRAIDAGAAGIYVSNHGGRQLNGGPGSFDVLEDIATSVNKQVPIIFDSGVRRGSDVFKALASGADIVALGRPV IYGLALGGAKGVQSVFEHIDHELEIVMQLAGTKTIDDIKNNPLLNIKY
Specific function: Unknown
COG id: COG1304
COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FMN hydroxy acid dehydrogenase domain [H]
Homologues:
Organism=Homo sapiens, GI11068137, Length=361, Percent_Identity=36.8421052631579, Blast_Score=229, Evalue=3e-60, Organism=Homo sapiens, GI54234014, Length=348, Percent_Identity=32.4712643678161, Blast_Score=197, Evalue=2e-50, Organism=Homo sapiens, GI7705393, Length=348, Percent_Identity=32.4712643678161, Blast_Score=197, Evalue=2e-50, Organism=Escherichia coli, GI1790033, Length=368, Percent_Identity=32.6086956521739, Blast_Score=179, Evalue=2e-46, Organism=Caenorhabditis elegans, GI193208036, Length=356, Percent_Identity=34.8314606741573, Blast_Score=206, Evalue=1e-53, Organism=Caenorhabditis elegans, GI32566217, Length=264, Percent_Identity=34.8484848484849, Blast_Score=142, Evalue=2e-34, Organism=Saccharomyces cerevisiae, GI6323587, Length=358, Percent_Identity=32.6815642458101, Blast_Score=184, Evalue=2e-47, Organism=Drosophila melanogaster, GI78707188, Length=352, Percent_Identity=35.2272727272727, Blast_Score=220, Evalue=1e-57, Organism=Drosophila melanogaster, GI281363140, Length=352, Percent_Identity=35.2272727272727, Blast_Score=219, Evalue=2e-57, Organism=Drosophila melanogaster, GI78707190, Length=352, Percent_Identity=35.2272727272727, Blast_Score=219, Evalue=2e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR012133 - InterPro: IPR000262 - InterPro: IPR008259 [H]
Pfam domain/function: PF01070 FMN_dh [H]
EC number: =1.13.12.4 [H]
Molecular weight: Translated: 39692; Mature: 39561
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS00557 FMN_HYDROXY_ACID_DH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMINGYEQSDREEKIDILNLESLEERAEKIIPTGGFGYISGGSEDEWTLRQNRTAFQHR CCCCCCCCCCCHHHCCCEECHHHHHHHHHHCCCCCCCEECCCCCCCCEEHHHCCHHHHHH QIAPKALSGIEKPELNTEIFGIPLNTPVMMAPAAAQGLAHSQGEKDTARGLAAVGGLMAQ HCCHHHHCCCCCCCCCCEEEEEECCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHH STYSSVSIADTAAAGEGAPQFFQLYMSKDWNFNESLLDEAKKAHVKAIILTVDATVDGYR CCCCCEEEHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHEEEEEEEEEECCCCCCH EADIKNKFAFPLPMANLTKFSEGDGQGKGIEEIYASAAQNIRPEDVRRIADYTQLPVIVK HCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHEE GIQTPEDAIRAIDAGAAGIYVSNHGGRQLNGGPGSFDVLEDIATSVNKQVPIIFDSGVRR CCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCC GSDVFKALASGADIVALGRPVIYGLALGGAKGVQSVFEHIDHELEIVMQLAGTKTIDDIK HHHHHHHHHCCCCEEEECCCEEEEEECCCHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHC NNPLLNIKY CCCEEEEEC >Mature Secondary Structure TMINGYEQSDREEKIDILNLESLEERAEKIIPTGGFGYISGGSEDEWTLRQNRTAFQHR CCCCCCCCCCHHHCCCEECHHHHHHHHHHCCCCCCCEECCCCCCCCEEHHHCCHHHHHH QIAPKALSGIEKPELNTEIFGIPLNTPVMMAPAAAQGLAHSQGEKDTARGLAAVGGLMAQ HCCHHHHCCCCCCCCCCEEEEEECCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHH STYSSVSIADTAAAGEGAPQFFQLYMSKDWNFNESLLDEAKKAHVKAIILTVDATVDGYR CCCCCEEEHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHEEEEEEEEEECCCCCCH EADIKNKFAFPLPMANLTKFSEGDGQGKGIEEIYASAAQNIRPEDVRRIADYTQLPVIVK HCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHEE GIQTPEDAIRAIDAGAAGIYVSNHGGRQLNGGPGSFDVLEDIATSVNKQVPIIFDSGVRR CCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCC GSDVFKALASGADIVALGRPVIYGLALGGAKGVQSVFEHIDHELEIVMQLAGTKTIDDIK HHHHHHHHHCCCCEEEECCCEEEEEECCCHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHC NNPLLNIKY CCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2324094; 3571231 [H]