| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492637
Identifier: 116492637
GI number: 116492637
Start: 872784
End: 873032
Strand: Direct
Name: 116492637
Synonym: PEPE_0871
Alternate gene names: NA
Gene position: 872784-873032 (Clockwise)
Preceding gene: 116492634
Following gene: 116492638
Centisome position: 47.63
GC content: 34.54
Gene sequence:
>249_bases ATGGCCGATCAAGAAATGCAAAAATTAATTAAGAGAATCAATGAACTTGCTAAAAAAGCAAAAGAAGAAGGACTTAGTGA CTTAGAGATTATCGAGCGAAAAGATCTGCGTCAAAAATATTTGAAGAAGTTCCGAGAGAGTTTCAGAAGTCAAGTTGAAA TGATGCAAATTTTTGATAAAGAAGGCAAAGAAGTCACACCTGAAAAGGTAAAAGAAGTTCAACGAAAAAAGGGCTTACGT GACGATTAG
Upstream 100 bases:
>100_bases TCATAAAAAATCCTAATACTCAAACAAATGTTCGCCTTAAAAATTGAAATTAAAAGCTTTCCATAGTATGATTAAGCTAC TAATAACGGAGGGATTTATT
Downstream 100 bases:
>100_bases AACGGGGCTTTTGTTTTTAGCCGTTTTTGTGTAAAATGAATAGGTAAGTCGTTGGTAAGGAGGATTGTAAATGTCAACTG GAATTTGGATTATGATTGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 82; Mature: 81
Protein sequence:
>82_residues MADQEMQKLIKRINELAKKAKEEGLSDLEIIERKDLRQKYLKKFRESFRSQVEMMQIFDKEGKEVTPEKVKEVQRKKGLR DD
Sequences:
>Translated_82_residues MADQEMQKLIKRINELAKKAKEEGLSDLEIIERKDLRQKYLKKFRESFRSQVEMMQIFDKEGKEVTPEKVKEVQRKKGLR DD >Mature_81_residues ADQEMQKLIKRINELAKKAKEEGLSDLEIIERKDLRQKYLKKFRESFRSQVEMMQIFDKEGKEVTPEKVKEVQRKKGLRD D
Specific function: Unknown
COG id: COG4224
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0291 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y871_PEDPA (Q03FU2)
Other databases:
- EMBL: CP000422 - RefSeq: YP_804372.1 - ProteinModelPortal: Q03FU2 - SMR: Q03FU2 - STRING: Q03FU2 - GeneID: 4418177 - GenomeReviews: CP000422_GR - KEGG: ppe:PEPE_0871 - NMPDR: fig|278197.10.peg.774 - eggNOG: COG4224 - HOGENOM: HBG727491 - OMA: TIENTTI - ProtClustDB: CLSK821371 - BioCyc: PPEN278197:PEPE_0871-MONOMER - GO: GO:0005737 - HAMAP: MF_01103 - InterPro: IPR009242 - InterPro: IPR023218 - Gene3D: G3DSA:1.10.287.540
Pfam domain/function: PF05979 DUF896
EC number: NA
Molecular weight: Translated: 9885; Mature: 9753
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADQEMQKLIKRINELAKKAKEEGLSDLEIIERKDLRQKYLKKFRESFRSQVEMMQIFDK CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EGKEVTPEKVKEVQRKKGLRDD CCCCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure ADQEMQKLIKRINELAKKAKEEGLSDLEIIERKDLRQKYLKKFRESFRSQVEMMQIFDK CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EGKEVTPEKVKEVQRKKGLRDD CCCCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA