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The map label for this gene is xseB

Identifier: 116492586

GI number: 116492586

Start: 825445

End: 825681

Strand: Direct

Name: xseB

Synonym: PEPE_0819

Alternate gene names: 116492586

Gene position: 825445-825681 (Clockwise)

Preceding gene: 116492585

Following gene: 116492587

Centisome position: 45.05

GC content: 31.65

Gene sequence:

>237_bases
ATGGCTGAAGAAAAAACATTTGAAGAAAATTTACAAGAATTACAACAAGTTGTTTCCAATTTAGAACAAGGTGATATTCC
ATTGGAAAAAGCTTTGACAGAATTTCAAAAAGGAATTCAGTTAAGTTCGGAATTACAAGAAACCCTAAAAAATGCTGAAA
AAACTCTTACAAAAGTTATGCAAGACAATGGTGAAGAGACTAACTTAGATTTGGGGACAGACGGAGAAAATGAATAG

Upstream 100 bases:

>100_bases
AATCGATTGAGGATTTATCAATTGACGATAAAATTCAACTGAATTTTAGTGATGGTAGTGCAAATGCAGTAATTAAAACA
ATTAACAGCGAGGATAAATA

Downstream 100 bases:

>100_bases
TAATTTTGATGACTTTGTCAAACAAAACGTAGAATTACTTGATCAGCACATCGATGAATTGTTTGATAGTGATTCAACAT
TGAATACCGATTTAAAAATG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 78; Mature: 77

Protein sequence:

>78_residues
MAEEKTFEENLQELQQVVSNLEQGDIPLEKALTEFQKGIQLSSELQETLKNAEKTLTKVMQDNGEETNLDLGTDGENE

Sequences:

>Translated_78_residues
MAEEKTFEENLQELQQVVSNLEQGDIPLEKALTEFQKGIQLSSELQETLKNAEKTLTKVMQDNGEETNLDLGTDGENE
>Mature_77_residues
AEEKTFEENLQELQQVVSNLEQGDIPLEKALTEFQKGIQLSSELQETLKNAEKTLTKVMQDNGEETNLDLGTDGENE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=71, Percent_Identity=40.8450704225352, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_PEDPA (Q03FZ3)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804321.1
- ProteinModelPortal:   Q03FZ3
- SMR:   Q03FZ3
- STRING:   Q03FZ3
- GeneID:   4418005
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_0819
- NMPDR:   fig|278197.10.peg.724
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   GMKISET
- BioCyc:   PPEN278197:PEPE_0819-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8784; Mature: 8653

Theoretical pI: Translated: 3.76; Mature: 3.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEEKTFEENLQELQQVVSNLEQGDIPLEKALTEFQKGIQLSSELQETLKNAEKTLTKVM
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
QDNGEETNLDLGTDGENE
HCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AEEKTFEENLQELQQVVSNLEQGDIPLEKALTEFQKGIQLSSELQETLKNAEKTLTKVM
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
QDNGEETNLDLGTDGENE
HCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA