Definition Pediococcus pentosaceus ATCC 25745, complete genome.
Accession NC_008525
Length 1,832,387

Click here to switch to the map view.

The map label for this gene is 116492555

Identifier: 116492555

GI number: 116492555

Start: 801378

End: 802292

Strand: Direct

Name: 116492555

Synonym: PEPE_0787

Alternate gene names: NA

Gene position: 801378-802292 (Clockwise)

Preceding gene: 116492554

Following gene: 116492556

Centisome position: 43.73

GC content: 38.14

Gene sequence:

>915_bases
ATGCCAGCAACAAATAACAACCAAGCAGTACGCACATTCCAACCTCAATTTAAGGAATTACTACAAGCCGTATATCAAAA
ACAAGCTTACTTCCGTGATTTCTTCGGTGGTTCAATTCAAGCAGAAGATGGCGTTTCTAATAACGCCAAAGCGTTCTCAC
TTAAAACTAGTGACATTCCAATGGTTATCACTAAAGGAACGGTAGATAGTGATGAAAACCGTGCATATAAAACAGATGCA
AATACAGCATTTGGGACTGGTACAGGAAATTCAACACGTTTTGGACCTCGTAAGGAAATTATTTACACAGATACAGATGT
TAATTATTCGTGGGATTGGGTATTTCACGAAGGTATCGACCGCGCAACTGTTAATAATGGTTTTGAGGATGCAGCAGCTG
ATCGTTTAGAATTACAAGCGCAAGCTAAGACCCAAATGTTCGATGACCAAGGCGGTACTTTTATTAGTAAAATCGCTGGT
AAAACTGAAAACATTACTGAAATTACTAACGATAGTGTATTGGCTTTGTTCAATAAACTTTCATCAATTTACGTCAACCT
TCAAACTATCGGAGAAAAGAAAGCGTGGGTTAATGCAGAACTCTACAACGCAATCATTGACCATCCTTTGACTACATCAT
CAAAGAGTTCATCAGCTAATATTGATGAAAACAACATTCTTCATTTCAAAGGATTTGAAATTCAAGAAACGCCGGATGCC
AAGTTCCAAGAAGGCGAAATTGCCTACACATCAATCAAGAACATTGCTCGTCAATTTACTGGTATCAACACAGCTCGTAC
GATTGAATCAGAAGATTTTGATGGTGTAGCACTTCAAGGAGCTGGTAAAGCTGGTGAATTCATTCTTGAAGACAACAAAG
CAGCAGTTGTTAAGGTGACATTAAAAAAAGCGTAA

Upstream 100 bases:

>100_bases
AGGGGTACTTAAAAGGCTCAACACCTAAAGATACAGGTACACAAGTTGCGGATGCTTTTACAGCTAAATTAAATAAATAT
AAATAAAGGAGGGCATATCT

Downstream 100 bases:

>100_bases
ACCCACCAGCTAGCGGGATAACTGCTAGTCAAAAAACGTTGTCCGAGAAGGTGGGGGACGCTAAGGATATCACTATTGCA
GCTGATCCAGTTGATGCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: Phage Capsid Protein

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MPATNNNQAVRTFQPQFKELLQAVYQKQAYFRDFFGGSIQAEDGVSNNAKAFSLKTSDIPMVITKGTVDSDENRAYKTDA
NTAFGTGTGNSTRFGPRKEIIYTDTDVNYSWDWVFHEGIDRATVNNGFEDAAADRLELQAQAKTQMFDDQGGTFISKIAG
KTENITEITNDSVLALFNKLSSIYVNLQTIGEKKAWVNAELYNAIIDHPLTTSSKSSSANIDENNILHFKGFEIQETPDA
KFQEGEIAYTSIKNIARQFTGINTARTIESEDFDGVALQGAGKAGEFILEDNKAAVVKVTLKKA

Sequences:

>Translated_304_residues
MPATNNNQAVRTFQPQFKELLQAVYQKQAYFRDFFGGSIQAEDGVSNNAKAFSLKTSDIPMVITKGTVDSDENRAYKTDA
NTAFGTGTGNSTRFGPRKEIIYTDTDVNYSWDWVFHEGIDRATVNNGFEDAAADRLELQAQAKTQMFDDQGGTFISKIAG
KTENITEITNDSVLALFNKLSSIYVNLQTIGEKKAWVNAELYNAIIDHPLTTSSKSSSANIDENNILHFKGFEIQETPDA
KFQEGEIAYTSIKNIARQFTGINTARTIESEDFDGVALQGAGKAGEFILEDNKAAVVKVTLKKA
>Mature_303_residues
PATNNNQAVRTFQPQFKELLQAVYQKQAYFRDFFGGSIQAEDGVSNNAKAFSLKTSDIPMVITKGTVDSDENRAYKTDAN
TAFGTGTGNSTRFGPRKEIIYTDTDVNYSWDWVFHEGIDRATVNNGFEDAAADRLELQAQAKTQMFDDQGGTFISKIAGK
TENITEITNDSVLALFNKLSSIYVNLQTIGEKKAWVNAELYNAIIDHPLTTSSKSSSANIDENNILHFKGFEIQETPDAK
FQEGEIAYTSIKNIARQFTGINTARTIESEDFDGVALQGAGKAGEFILEDNKAAVVKVTLKKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33522; Mature: 33391

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPATNNNQAVRTFQPQFKELLQAVYQKQAYFRDFFGGSIQAEDGVSNNAKAFSLKTSDIP
CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCC
MVITKGTVDSDENRAYKTDANTAFGTGTGNSTRFGPRKEIIYTDTDVNYSWDWVFHEGID
EEEEECCCCCCCCCEEECCCCCEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCC
RATVNNGFEDAAADRLELQAQAKTQMFDDQGGTFISKIAGKTENITEITNDSVLALFNKL
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCHHHCCCHHHHHHHHH
SSIYVNLQTIGEKKAWVNAELYNAIIDHPLTTSSKSSSANIDENNILHFKGFEIQETPDA
HHHEEEEEECCCCHHEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEECCCCCC
KFQEGEIAYTSIKNIARQFTGINTARTIESEDFDGVALQGAGKAGEFILEDNKAAVVKVT
CCCCCCCHHHHHHHHHHHHCCCCHHEEECCCCCCCEEEECCCCCCCEEEECCCEEEEEEE
LKKA
EECC
>Mature Secondary Structure 
PATNNNQAVRTFQPQFKELLQAVYQKQAYFRDFFGGSIQAEDGVSNNAKAFSLKTSDIP
CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCC
MVITKGTVDSDENRAYKTDANTAFGTGTGNSTRFGPRKEIIYTDTDVNYSWDWVFHEGID
EEEEECCCCCCCCCEEECCCCCEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCC
RATVNNGFEDAAADRLELQAQAKTQMFDDQGGTFISKIAGKTENITEITNDSVLALFNKL
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCHHHCCCHHHHHHHHH
SSIYVNLQTIGEKKAWVNAELYNAIIDHPLTTSSKSSSANIDENNILHFKGFEIQETPDA
HHHEEEEEECCCCHHEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEECCCCCC
KFQEGEIAYTSIKNIARQFTGINTARTIESEDFDGVALQGAGKAGEFILEDNKAAVVKVT
CCCCCCCHHHHHHHHHHHHCCCCHHEEECCCCCCCEEEECCCCCCCEEEECCCEEEEEEE
LKKA
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA