| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492520
Identifier: 116492520
GI number: 116492520
Start: 784187
End: 784912
Strand: Direct
Name: 116492520
Synonym: PEPE_0752
Alternate gene names: NA
Gene position: 784187-784912 (Clockwise)
Preceding gene: 116492518
Following gene: 116492521
Centisome position: 42.8
GC content: 36.09
Gene sequence:
>726_bases ATGAACGAATTAGTAATCATGAAAGACCAACAAGCAGTAACGACTAGCTTACAAGTAGCAGAAGTATTTGGAAAAGAACA TAAAAATGTGCTGAGAGATATCAGCAACTTAAATTCAGATCGGCTCAATTTTGAGCAGATATTTATGGAAAGCACAGAAC CAGATTTATACGGACGTGACCGTCGAATTTATTATATGAACCGAGACGGCTTTACTTTACTAGCAATGGGATTTACAGGA AAGAAAGCATTGGACTTCAAACTGAAATACATCGAAGCCTTTAACAATATGGAAGAAGTAATTAAGGAAGAACGCATCCA ATTACCTAGTGATCCAATGAAAGTACTGGAATTAATATTTGAAGCCAACAAAAACACGGATAAGAAAGTAGAACGGATTG ATAAAGACGTTGATTACCTAAAAAACAACCAACGCTTAGACCAAACAGAATACAGCTACATTTCACGAAAAGTATCAAAT AAGGTTAATGAATACTCTCAAGTCCACGGGTCAACATTAACAGCTCCTCAACGAAGTAAATTATTCAAAGATATCAACCG AGGAATCAACGAAGTAACAGGTGTTAAGACGCGTTCACAACTACGTCAGAAAGATTTTGATATAGCAGATGAATTTATTG ACAACTGGCAACCATCAACGGCTACCGTTCAAATTATTAAACAAATGAGTAATGTAGCAGACGGACAAACAACGTTAGGA GCATAA
Upstream 100 bases:
>100_bases AAGCCTTAGTTAATTCAAGAGCAATTTCTTTGTCTGACATTATCATATCACCACCTTTAATTGAACTAATTAAATTATAC ACACGAAAGAAGGAAAACAA
Downstream 100 bases:
>100_bases AAATGGCATTAGACACAATGTTTGAAGCCATGTCTAAAGAATTGGTTAATGAAGTTTTAGACAGGCTTAGAGATGAAGCA ATTATTAAGTTGGACCAAGA
Product: Phage anti-repressor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MNELVIMKDQQAVTTSLQVAEVFGKEHKNVLRDISNLNSDRLNFEQIFMESTEPDLYGRDRRIYYMNRDGFTLLAMGFTG KKALDFKLKYIEAFNNMEEVIKEERIQLPSDPMKVLELIFEANKNTDKKVERIDKDVDYLKNNQRLDQTEYSYISRKVSN KVNEYSQVHGSTLTAPQRSKLFKDINRGINEVTGVKTRSQLRQKDFDIADEFIDNWQPSTATVQIIKQMSNVADGQTTLG A
Sequences:
>Translated_241_residues MNELVIMKDQQAVTTSLQVAEVFGKEHKNVLRDISNLNSDRLNFEQIFMESTEPDLYGRDRRIYYMNRDGFTLLAMGFTG KKALDFKLKYIEAFNNMEEVIKEERIQLPSDPMKVLELIFEANKNTDKKVERIDKDVDYLKNNQRLDQTEYSYISRKVSN KVNEYSQVHGSTLTAPQRSKLFKDINRGINEVTGVKTRSQLRQKDFDIADEFIDNWQPSTATVQIIKQMSNVADGQTTLG A >Mature_241_residues MNELVIMKDQQAVTTSLQVAEVFGKEHKNVLRDISNLNSDRLNFEQIFMESTEPDLYGRDRRIYYMNRDGFTLLAMGFTG KKALDFKLKYIEAFNNMEEVIKEERIQLPSDPMKVLELIFEANKNTDKKVERIDKDVDYLKNNQRLDQTEYSYISRKVSN KVNEYSQVHGSTLTAPQRSKLFKDINRGINEVTGVKTRSQLRQKDFDIADEFIDNWQPSTATVQIIKQMSNVADGQTTLG A
Specific function: Unknown
COG id: COG3646
COG function: function code S; Uncharacterized phage-encoded protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018877 - InterPro: IPR014054 - InterPro: IPR019104 [H]
Pfam domain/function: PF10549 ORF11CD3; PF09669 Phage_pRha [H]
EC number: NA
Molecular weight: Translated: 27938; Mature: 27938
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNELVIMKDQQAVTTSLQVAEVFGKEHKNVLRDISNLNSDRLNFEQIFMESTEPDLYGRD CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC RRIYYMNRDGFTLLAMGFTGKKALDFKLKYIEAFNNMEEVIKEERIQLPSDPMKVLELIF CEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH EANKNTDKKVERIDKDVDYLKNNQRLDQTEYSYISRKVSNKVNEYSQVHGSTLTAPQRSK HCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH LFKDINRGINEVTGVKTRSQLRQKDFDIADEFIDNWQPSTATVQIIKQMSNVADGQTTLG HHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC A C >Mature Secondary Structure MNELVIMKDQQAVTTSLQVAEVFGKEHKNVLRDISNLNSDRLNFEQIFMESTEPDLYGRD CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC RRIYYMNRDGFTLLAMGFTGKKALDFKLKYIEAFNNMEEVIKEERIQLPSDPMKVLELIF CEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH EANKNTDKKVERIDKDVDYLKNNQRLDQTEYSYISRKVSNKVNEYSQVHGSTLTAPQRSK HCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH LFKDINRGINEVTGVKTRSQLRQKDFDIADEFIDNWQPSTATVQIIKQMSNVADGQTTLG HHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]