| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492478
Identifier: 116492478
GI number: 116492478
Start: 748266
End: 749366
Strand: Direct
Name: 116492478
Synonym: PEPE_0710
Alternate gene names: NA
Gene position: 748266-749366 (Clockwise)
Preceding gene: 116492477
Following gene: 116492479
Centisome position: 40.84
GC content: 37.6
Gene sequence:
>1101_bases TTGCAAGCATGCGCAGTGATTGCAGAGTTTAATCCATTTCATAATGGACATCAATATTTGTTAGAGCAGGCACGCAAGGT TACTAAGGCGGACTTAGTGATCGTAATTATGAGTGGCAATTTTGTACAGCGGGGGGAACCCGCCTTGATTAATAAATGGG AGAGAGCACGGGTTGCCATTAATTGTGGTGCTGATTTAGTTGTAGAAATACCTACTGAATATGCCATTGATTCTGCTAAA GAATTTGCCCATGCGGGAGTAGAGATTGCTCAAAAATTAGGAGCTAGCTTTTTAGCTTTTGGGAGTGAAAATCCAGATTT GGATTTTGAAAATGAGAGTAAGATTCTGGACCGACAATTTGACCAGAGAGCCAAAAAATATAATCAAAATTTTGCAGCTC AATTATTTGATGATACAGCCATTATGAACTCGAACGATATTCTAGGAATCAATTATGCGTACTGGAATTCTAAATCAAAA AGAGGCTTGCAGTTAATACCATTGCAAAGGGAACAAGCAGATCACCGAGATACGGAGATAAAGGGCTCGATTGCTAGTGC ATCGGCAATTCGGAGGGCAGCTTTAGAACAATCAGAGTACTTTAACGCGGTACCTAAGGCGTCTTTAAAGGCTATTAGAA ATGCTAAATTAACAAGCTGGGAAGATTTCTGGATAATGTTAAATTATCGGTTATTAACTTCAACGCCCCAAGAATTACGT CATATAAAGGGTGTTACAGAGGGTTTCGAAAATCGTATTTTAAATTTGGTTGATAAAAGTAACTCGTTTACAGAGTTGAT GCAGAAGTTGAAGACTAAAAGATACACTTATACTAGAATTCAACGAAGTTTAACGAATATTTTACTTAATATCCAAGCTA CTCCGTTTAATCTAACTAAGACGAGATTATTGGCGACAAATCAGCTCGGCCGGATTTTTATCCGAGAAGCAGCCCTTGGA TCAGTAGTAATGACCAAAGTCACCAAAGAAGATTTTGAAAATAATTATGCAATTACAAAACGAGCAGACGATTTATACCA ATTAGTTTCTCCATATCAATGGGGAAAGGGCCCTATTATAAAAAAGAATGTCAAGGAATAA
Upstream 100 bases:
>100_bases AAGCTGGTTTTTCTAAAATCAAATACTATGCTGATTATGGAAAAGCTGAAGTAGATGAAAAAACAACTCGGTGGTTCTTT AGTTGTAGGAGGTAGCTGTA
Downstream 100 bases:
>100_bases ACGTTGACAATGTGGTTCCACATGGTATAATTGTTTCTGTTGCATTGGAGGTTCATTATGGAATGGTATTTTACAGAACT GCGTAAGCACAAAGAGCCGT
Product: nucleotidyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MQACAVIAEFNPFHNGHQYLLEQARKVTKADLVIVIMSGNFVQRGEPALINKWERARVAINCGADLVVEIPTEYAIDSAK EFAHAGVEIAQKLGASFLAFGSENPDLDFENESKILDRQFDQRAKKYNQNFAAQLFDDTAIMNSNDILGINYAYWNSKSK RGLQLIPLQREQADHRDTEIKGSIASASAIRRAALEQSEYFNAVPKASLKAIRNAKLTSWEDFWIMLNYRLLTSTPQELR HIKGVTEGFENRILNLVDKSNSFTELMQKLKTKRYTYTRIQRSLTNILLNIQATPFNLTKTRLLATNQLGRIFIREAALG SVVMTKVTKEDFENNYAITKRADDLYQLVSPYQWGKGPIIKKNVKE
Sequences:
>Translated_366_residues MQACAVIAEFNPFHNGHQYLLEQARKVTKADLVIVIMSGNFVQRGEPALINKWERARVAINCGADLVVEIPTEYAIDSAK EFAHAGVEIAQKLGASFLAFGSENPDLDFENESKILDRQFDQRAKKYNQNFAAQLFDDTAIMNSNDILGINYAYWNSKSK RGLQLIPLQREQADHRDTEIKGSIASASAIRRAALEQSEYFNAVPKASLKAIRNAKLTSWEDFWIMLNYRLLTSTPQELR HIKGVTEGFENRILNLVDKSNSFTELMQKLKTKRYTYTRIQRSLTNILLNIQATPFNLTKTRLLATNQLGRIFIREAALG SVVMTKVTKEDFENNYAITKRADDLYQLVSPYQWGKGPIIKKNVKE >Mature_366_residues MQACAVIAEFNPFHNGHQYLLEQARKVTKADLVIVIMSGNFVQRGEPALINKWERARVAINCGADLVVEIPTEYAIDSAK EFAHAGVEIAQKLGASFLAFGSENPDLDFENESKILDRQFDQRAKKYNQNFAAQLFDDTAIMNSNDILGINYAYWNSKSK RGLQLIPLQREQADHRDTEIKGSIASASAIRRAALEQSEYFNAVPKASLKAIRNAKLTSWEDFWIMLNYRLLTSTPQELR HIKGVTEGFENRILNLVDKSNSFTELMQKLKTKRYTYTRIQRSLTNILLNIQATPFNLTKTRLLATNQLGRIFIREAALG SVVMTKVTKEDFENNYAITKRADDLYQLVSPYQWGKGPIIKKNVKE
Specific function: Unknown
COG id: COG1323
COG function: function code R; Predicted nucleotidyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0348 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y710_PEDPA (Q03GA1)
Other databases:
- EMBL: CP000422 - RefSeq: YP_804213.1 - ProteinModelPortal: Q03GA1 - STRING: Q03GA1 - GeneID: 4418105 - GenomeReviews: CP000422_GR - KEGG: ppe:PEPE_0710 - NMPDR: fig|278197.10.peg.633 - eggNOG: COG1323 - HOGENOM: HBG477465 - OMA: PNNILGF - BioCyc: PPEN278197:PEPE_0710-MONOMER - HAMAP: MF_01539 - InterPro: IPR004821 - InterPro: IPR014729 - InterPro: IPR008513 - Gene3D: G3DSA:3.40.50.620 - TIGRFAMs: TIGR00125
Pfam domain/function: PF05636 DUF795
EC number: NA
Molecular weight: Translated: 41662; Mature: 41662
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQACAVIAEFNPFHNGHQYLLEQARKVTKADLVIVIMSGNFVQRGEPALINKWERARVAI CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHCCCCCEEEEE NCGADLVVEIPTEYAIDSAKEFAHAGVEIAQKLGASFLAFGSENPDLDFENESKILDRQF ECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHH DQRAKKYNQNFAAQLFDDTAIMNSNDILGINYAYWNSKSKRGLQLIPLQREQADHRDTEI HHHHHHHCCCHHHHHHCCCEEECCCCEEEEEEEEECCCCCCCEEEEECCHHHCCCCCCHH KGSIASASAIRRAALEQSEYFNAVPKASLKAIRNAKLTSWEDFWIMLNYRLLTSTPQELR CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEECCCHHHHH HIKGVTEGFENRILNLVDKSNSFTELMQKLKTKRYTYTRIQRSLTNILLNIQATPFNLTK HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHH TRLLATNQLGRIFIREAALGSVVMTKVTKEDFENNYAITKRADDLYQLVSPYQWGKGPII HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCC KKNVKE CCCCCC >Mature Secondary Structure MQACAVIAEFNPFHNGHQYLLEQARKVTKADLVIVIMSGNFVQRGEPALINKWERARVAI CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHCCCCCEEEEE NCGADLVVEIPTEYAIDSAKEFAHAGVEIAQKLGASFLAFGSENPDLDFENESKILDRQF ECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHH DQRAKKYNQNFAAQLFDDTAIMNSNDILGINYAYWNSKSKRGLQLIPLQREQADHRDTEI HHHHHHHCCCHHHHHHCCCEEECCCCEEEEEEEEECCCCCCCEEEEECCHHHCCCCCCHH KGSIASASAIRRAALEQSEYFNAVPKASLKAIRNAKLTSWEDFWIMLNYRLLTSTPQELR CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEECCCHHHHH HIKGVTEGFENRILNLVDKSNSFTELMQKLKTKRYTYTRIQRSLTNILLNIQATPFNLTK HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHH TRLLATNQLGRIFIREAALGSVVMTKVTKEDFENNYAITKRADDLYQLVSPYQWGKGPII HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCC KKNVKE CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA