| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is ytgP [H]
Identifier: 116492416
GI number: 116492416
Start: 688479
End: 690164
Strand: Direct
Name: ytgP [H]
Synonym: PEPE_0646
Alternate gene names: 116492416
Gene position: 688479-690164 (Clockwise)
Preceding gene: 116492415
Following gene: 116492417
Centisome position: 37.57
GC content: 39.21
Gene sequence:
>1686_bases ATGGATAAGCAATCTGAAATGGATAATTCAGAGTCTCTCTATATGGGTTCACAACCCTTAAGAGATAATTCAGGAAAATC TTCATCCAAAGCAAAGATGCTCGAAGGTTCGGCGTGGATGACCGCCGGAAGTATCTTTTCTAGAATATTAGGCGCCATTT ATATTATCCCATGGGTAATTTGGTTTGGTGTTTATAGTGACCAAGCGAACGCTCTTTTTACTAAAGGATATAATATTTAT AGTTTCTTTCTAATTGCTGCGATTGCAGGAATTCCATCTGCGATTTCCAAGCAGGTATCCCATTACAACGCAATTAATGA GTTTGCGTTGGGGCAACGTTTGTATAAGCGGGGACTTTTGTTATCCGTCGGAACGGGAATTATCTGTGCCGCAATTCTGT ATTTTGGCGCTCCATTTTTAAAAGATGGTGACCCGAACGTAATTACGGTTCTCCATGCGTTGGCTTGGGCAGTGTTAGTA ATTCCTACGATGAGTTTGACTCGGGGCTTTTTCCAAGGTTACCAAGAAATGGGACCATCAGCCGTTTCTCAATTTATTGA GCAATTAGCCCGAGTGATTTATATGCTAACAACCGCCTACTTTATTATGGGAAAAAGCGGTCAAGGCGATTGGGTTTATG GCGTTTCACAATCAACCTTTGCGGCTTTTATTGGTGCATTAGGTGGATTATTAGTGCTTGGGATTTATTTCATTAAATAC CGTAAGCGACTTTCCTATTTGTCACAGCATAGTGCCAATGAACTGGTAGTTTCAACGTCAACGCTATATAAAGAAATTAT TGCTCAAGCTGTACCTTTTATTATTATTGGATCAGCTATTACAATTTTCCAATTAATCGACCAATACACCTTTTTCCGGA TTATGAATGCGGTGAGTGACTATTCGACTGCCGTCTTAAATAATATGTACGCAATCTTTGCTTTTAATGCTAACAAACTG GTAATGATTGTTATTTCATTAGCGTCAGCGATGGCCGTCACTTCCGTACCGATTTTATCGGAAGCCAAAACTAGGGGCGA TCGAGCAGAAATTAGTCGACAAGTAACGGATTCAATTTTGCTCTTTGCATTTTTGATGATTCCAGCTGCTTTAGGGATGG CTGCGGTAGCTCAACCAGCATACACGCTGTTCTATCATCTAAGTGATGTAGGAACTGCCATTTTACAATTTAATTCTTAT GTAGCAATTGTTTTAGGATTATTTACAGTGATTTCGGCTATTATGCAAGGAATTGGTGAAAATGTCTTAGCCGTGAAGTA TTTCTGTGTCGGAATGATTGTTAAATTTATTTTCCAATTTCCCATGGTGGCATTATTTTCAGCAGTGGGTTCATTAATTT CAACGGCTATTGGATTTATGGTAGTGAATTGGATGATTTTACGGCATATCAACTTGGAATATGGCTTAGATTATCGTCGA ATTAATACATTTATTGGAAAAATCATCACTTATGCTTTTGGAACATTCTTGATTGCAATGGTCGTAACTAATGGATTATA CATAGTGATGGATCCAGCCAGTAAAGTACAATCGTTACTAGTTATAGCTGCGGCCGTAGTTTTAGGTGGAGCATTTTATC TCTACTTTGTATTAAAGAGCCGCCTAGCGGATGAAATTGTGGGGGCACGGGCAGCTGGCTTACGTCGAATGCTAAAGATT AGTTAG
Upstream 100 bases:
>100_bases TTTAAGTGTTAGCTGAGCTATCAGCGTAAATTTAATTGTATCGGAGGTATGAATTGTATTAAAATAGTGTAGATTGACTA GAGAAAGTAGGTTTTTATAA
Downstream 100 bases:
>100_bases GAGTAGACATGCGAGTAGATAAATTTTTACATGACATGAATATGGGAACGCGAACCCAAATTCGAAAAATGATTAAAGAC AAGCTAATCTTTGTTAACGA
Product: polysaccharide transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 561; Mature: 561
Protein sequence:
>561_residues MDKQSEMDNSESLYMGSQPLRDNSGKSSSKAKMLEGSAWMTAGSIFSRILGAIYIIPWVIWFGVYSDQANALFTKGYNIY SFFLIAAIAGIPSAISKQVSHYNAINEFALGQRLYKRGLLLSVGTGIICAAILYFGAPFLKDGDPNVITVLHALAWAVLV IPTMSLTRGFFQGYQEMGPSAVSQFIEQLARVIYMLTTAYFIMGKSGQGDWVYGVSQSTFAAFIGALGGLLVLGIYFIKY RKRLSYLSQHSANELVVSTSTLYKEIIAQAVPFIIIGSAITIFQLIDQYTFFRIMNAVSDYSTAVLNNMYAIFAFNANKL VMIVISLASAMAVTSVPILSEAKTRGDRAEISRQVTDSILLFAFLMIPAALGMAAVAQPAYTLFYHLSDVGTAILQFNSY VAIVLGLFTVISAIMQGIGENVLAVKYFCVGMIVKFIFQFPMVALFSAVGSLISTAIGFMVVNWMILRHINLEYGLDYRR INTFIGKIITYAFGTFLIAMVVTNGLYIVMDPASKVQSLLVIAAAVVLGGAFYLYFVLKSRLADEIVGARAAGLRRMLKI S
Sequences:
>Translated_561_residues MDKQSEMDNSESLYMGSQPLRDNSGKSSSKAKMLEGSAWMTAGSIFSRILGAIYIIPWVIWFGVYSDQANALFTKGYNIY SFFLIAAIAGIPSAISKQVSHYNAINEFALGQRLYKRGLLLSVGTGIICAAILYFGAPFLKDGDPNVITVLHALAWAVLV IPTMSLTRGFFQGYQEMGPSAVSQFIEQLARVIYMLTTAYFIMGKSGQGDWVYGVSQSTFAAFIGALGGLLVLGIYFIKY RKRLSYLSQHSANELVVSTSTLYKEIIAQAVPFIIIGSAITIFQLIDQYTFFRIMNAVSDYSTAVLNNMYAIFAFNANKL VMIVISLASAMAVTSVPILSEAKTRGDRAEISRQVTDSILLFAFLMIPAALGMAAVAQPAYTLFYHLSDVGTAILQFNSY VAIVLGLFTVISAIMQGIGENVLAVKYFCVGMIVKFIFQFPMVALFSAVGSLISTAIGFMVVNWMILRHINLEYGLDYRR INTFIGKIITYAFGTFLIAMVVTNGLYIVMDPASKVQSLLVIAAAVVLGGAFYLYFVLKSRLADEIVGARAAGLRRMLKI S >Mature_561_residues MDKQSEMDNSESLYMGSQPLRDNSGKSSSKAKMLEGSAWMTAGSIFSRILGAIYIIPWVIWFGVYSDQANALFTKGYNIY SFFLIAAIAGIPSAISKQVSHYNAINEFALGQRLYKRGLLLSVGTGIICAAILYFGAPFLKDGDPNVITVLHALAWAVLV IPTMSLTRGFFQGYQEMGPSAVSQFIEQLARVIYMLTTAYFIMGKSGQGDWVYGVSQSTFAAFIGALGGLLVLGIYFIKY RKRLSYLSQHSANELVVSTSTLYKEIIAQAVPFIIIGSAITIFQLIDQYTFFRIMNAVSDYSTAVLNNMYAIFAFNANKL VMIVISLASAMAVTSVPILSEAKTRGDRAEISRQVTDSILLFAFLMIPAALGMAAVAQPAYTLFYHLSDVGTAILQFNSY VAIVLGLFTVISAIMQGIGENVLAVKYFCVGMIVKFIFQFPMVALFSAVGSLISTAIGFMVVNWMILRHINLEYGLDYRR INTFIGKIITYAFGTFLIAMVVTNGLYIVMDPASKVQSLLVIAAAVVLGGAFYLYFVLKSRLADEIVGARAAGLRRMLKI S
Specific function: May play a role in cell division, although it is not essential for growth [H]
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential). Note=Localizes at the septum [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002797 [H]
Pfam domain/function: PF01943 Polysacc_synt [H]
EC number: NA
Molecular weight: Translated: 61419; Mature: 61419
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKQSEMDNSESLYMGSQPLRDNSGKSSSKAKMLEGSAWMTAGSIFSRILGAIYIIPWVI CCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH WFGVYSDQANALFTKGYNIYSFFLIAAIAGIPSAISKQVSHYNAINEFALGQRLYKRGLL HHHHHCCCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH LSVGTGIICAAILYFGAPFLKDGDPNVITVLHALAWAVLVIPTMSLTRGFFQGYQEMGPS HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH AVSQFIEQLARVIYMLTTAYFIMGKSGQGDWVYGVSQSTFAAFIGALGGLLVLGIYFIKY HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH RKRLSYLSQHSANELVVSTSTLYKEIIAQAVPFIIIGSAITIFQLIDQYTFFRIMNAVSD HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSTAVLNNMYAIFAFNANKLVMIVISLASAMAVTSVPILSEAKTRGDRAEISRQVTDSIL HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHH LFAFLMIPAALGMAAVAQPAYTLFYHLSDVGTAILQFNSYVAIVLGLFTVISAIMQGIGE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NVLAVKYFCVGMIVKFIFQFPMVALFSAVGSLISTAIGFMVVNWMILRHINLEYGLDYRR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHH INTFIGKIITYAFGTFLIAMVVTNGLYIVMDPASKVQSLLVIAAAVVLGGAFYLYFVLKS HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLADEIVGARAAGLRRMLKIS HHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDKQSEMDNSESLYMGSQPLRDNSGKSSSKAKMLEGSAWMTAGSIFSRILGAIYIIPWVI CCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH WFGVYSDQANALFTKGYNIYSFFLIAAIAGIPSAISKQVSHYNAINEFALGQRLYKRGLL HHHHHCCCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH LSVGTGIICAAILYFGAPFLKDGDPNVITVLHALAWAVLVIPTMSLTRGFFQGYQEMGPS HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH AVSQFIEQLARVIYMLTTAYFIMGKSGQGDWVYGVSQSTFAAFIGALGGLLVLGIYFIKY HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH RKRLSYLSQHSANELVVSTSTLYKEIIAQAVPFIIIGSAITIFQLIDQYTFFRIMNAVSD HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSTAVLNNMYAIFAFNANKLVMIVISLASAMAVTSVPILSEAKTRGDRAEISRQVTDSIL HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHH LFAFLMIPAALGMAAVAQPAYTLFYHLSDVGTAILQFNSYVAIVLGLFTVISAIMQGIGE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NVLAVKYFCVGMIVKFIFQFPMVALFSAVGSLISTAIGFMVVNWMILRHINLEYGLDYRR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHH INTFIGKIITYAFGTFLIAMVVTNGLYIVMDPASKVQSLLVIAAAVVLGGAFYLYFVLKS HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLADEIVGARAAGLRRMLKIS HHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]