| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is 116492368
Identifier: 116492368
GI number: 116492368
Start: 627933
End: 629096
Strand: Direct
Name: 116492368
Synonym: PEPE_0573
Alternate gene names: NA
Gene position: 627933-629096 (Clockwise)
Preceding gene: 116492367
Following gene: 116492369
Centisome position: 34.27
GC content: 28.01
Gene sequence:
>1164_bases ATGAAAGAAAAAATTAAAGATGTTCCTGAACATGGATCTTATGCTAAAACTTATTTATACACTGTGGGATATTTAGTATG GCTGTTCCCATACCTTATATTACGTCTACAGCAGTATGAAGGAAGTACAAGTCCTCTAATTAAGGTTCTAAAATATATTG GAATAGCAATTGCTTGTTTAATAATATTTACTGATTTCAGAGAGAAATTTCCAATAAAAAGGCTTGTTTTAGGTGTAGCT ATATTATTATTTATATTTGTAAATAATGGTTTCCTAGGTGGAGTAGGTATCTGGTGGGAACTCTGTGTTTTTATATTTGC AGCTAAAAAAATTAATTTTAGACATTTTTTAAAATATGTTATTATTTTTCAAACTGTATATTATGGTGGAAGTATAATAC TTTCAAAACTAGGTATTATTGCGAATTCTGTTAGTTACAGATACACACATGTTAGAGATGCTTTAGGATTTGGATGGTCT ACGTGGCCTGTACATGGCTTTTTATATATAGTTTCTTTTTACACGATATTGAGAAATAAAAAAATTACATTGTTTGAGGT AGTCGGTTTAGAGTTAATAAATATCTTGTTATATTTTTATACTAATACTAGAAGTCCTTTTATATTGATTACTGTATACT TGGTATTTTTGGTACTAATTAAATTAATATCGATTAATATAGTAAAAAATGTATTTTTTAAATTTTTCTATTTATTAAGT GCTCCTATAGTCACTTTTAGTATGTACTGGTTAAGTGCCAATTATCCCAAATATTATAATCTAGATGATTTATTATCGGG AAGAATCTCACTTGGGTACAGCGCTATAAGTCAATTTGGTATACATTTATTTGGTAAGAAAATTCTATTTAATTCTAGTC GTGACGTAATTGGGTTTAATTATTTGTTTGTTGATAGCTCTTTTTTGCAGTATCTACTTAGATTTGGGATGATTTCATTA ATCGTGTTCTTAGTTATAACGGTTTTATTTCAAAAAAGATTACTTAAAACAGGAAATACTATCTTAATAATGTCTTTTCT TCTAGTCCTATTGAATGGAGTACTGGACCCAGAATATATTGAGCCATTCTATAATACTTTTCTTATAATGTTCGCAACTC TGTTTAATTCGGATGGATTGAACGGACTGGAAGATATTGAATAA
Upstream 100 bases:
>100_bases ATTAGATATGGAAATGTTTTTTATAAGACGAGAAACCTCCATAATCACAGTGTTTTCGGACAATTTAATGAAAAATAGAA TAAGTCTGTAGGTGTCAGTT
Downstream 100 bases:
>100_bases TAAAAAAATATAATTATAGCCGATTTGTTGGCCATATTAAAAGAAAGTTGGAAGTATAATGCAAGAATATCTAGTAGTTG GATCAGGACTCTTTGGTTCC
Product: polysaccharide polymerase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 387; Mature: 387
Protein sequence:
>387_residues MKEKIKDVPEHGSYAKTYLYTVGYLVWLFPYLILRLQQYEGSTSPLIKVLKYIGIAIACLIIFTDFREKFPIKRLVLGVA ILLFIFVNNGFLGGVGIWWELCVFIFAAKKINFRHFLKYVIIFQTVYYGGSIILSKLGIIANSVSYRYTHVRDALGFGWS TWPVHGFLYIVSFYTILRNKKITLFEVVGLELINILLYFYTNTRSPFILITVYLVFLVLIKLISINIVKNVFFKFFYLLS APIVTFSMYWLSANYPKYYNLDDLLSGRISLGYSAISQFGIHLFGKKILFNSSRDVIGFNYLFVDSSFLQYLLRFGMISL IVFLVITVLFQKRLLKTGNTILIMSFLLVLLNGVLDPEYIEPFYNTFLIMFATLFNSDGLNGLEDIE
Sequences:
>Translated_387_residues MKEKIKDVPEHGSYAKTYLYTVGYLVWLFPYLILRLQQYEGSTSPLIKVLKYIGIAIACLIIFTDFREKFPIKRLVLGVA ILLFIFVNNGFLGGVGIWWELCVFIFAAKKINFRHFLKYVIIFQTVYYGGSIILSKLGIIANSVSYRYTHVRDALGFGWS TWPVHGFLYIVSFYTILRNKKITLFEVVGLELINILLYFYTNTRSPFILITVYLVFLVLIKLISINIVKNVFFKFFYLLS APIVTFSMYWLSANYPKYYNLDDLLSGRISLGYSAISQFGIHLFGKKILFNSSRDVIGFNYLFVDSSFLQYLLRFGMISL IVFLVITVLFQKRLLKTGNTILIMSFLLVLLNGVLDPEYIEPFYNTFLIMFATLFNSDGLNGLEDIE >Mature_387_residues MKEKIKDVPEHGSYAKTYLYTVGYLVWLFPYLILRLQQYEGSTSPLIKVLKYIGIAIACLIIFTDFREKFPIKRLVLGVA ILLFIFVNNGFLGGVGIWWELCVFIFAAKKINFRHFLKYVIIFQTVYYGGSIILSKLGIIANSVSYRYTHVRDALGFGWS TWPVHGFLYIVSFYTILRNKKITLFEVVGLELINILLYFYTNTRSPFILITVYLVFLVLIKLISINIVKNVFFKFFYLLS APIVTFSMYWLSANYPKYYNLDDLLSGRISLGYSAISQFGIHLFGKKILFNSSRDVIGFNYLFVDSSFLQYLLRFGMISL IVFLVITVLFQKRLLKTGNTILIMSFLLVLLNGVLDPEYIEPFYNTFLIMFATLFNSDGLNGLEDIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44817; Mature: 44817
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEKIKDVPEHGSYAKTYLYTVGYLVWLFPYLILRLQQYEGSTSPLIKVLKYIGIAIACL CCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IIFTDFREKFPIKRLVLGVAILLFIFVNNGFLGGVGIWWELCVFIFAAKKINFRHFLKYV HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH IIFQTVYYGGSIILSKLGIIANSVSYRYTHVRDALGFGWSTWPVHGFLYIVSFYTILRNK HHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC KITLFEVVGLELINILLYFYTNTRSPFILITVYLVFLVLIKLISINIVKNVFFKFFYLLS CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH APIVTFSMYWLSANYPKYYNLDDLLSGRISLGYSAISQFGIHLFGKKILFNSSRDVIGFN HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE YLFVDSSFLQYLLRFGMISLIVFLVITVLFQKRLLKTGNTILIMSFLLVLLNGVLDPEYI EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHH EPFYNTFLIMFATLFNSDGLNGLEDIE HHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MKEKIKDVPEHGSYAKTYLYTVGYLVWLFPYLILRLQQYEGSTSPLIKVLKYIGIAIACL CCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IIFTDFREKFPIKRLVLGVAILLFIFVNNGFLGGVGIWWELCVFIFAAKKINFRHFLKYV HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH IIFQTVYYGGSIILSKLGIIANSVSYRYTHVRDALGFGWSTWPVHGFLYIVSFYTILRNK HHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC KITLFEVVGLELINILLYFYTNTRSPFILITVYLVFLVLIKLISINIVKNVFFKFFYLLS CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH APIVTFSMYWLSANYPKYYNLDDLLSGRISLGYSAISQFGIHLFGKKILFNSSRDVIGFN HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE YLFVDSSFLQYLLRFGMISLIVFLVITVLFQKRLLKTGNTILIMSFLLVLLNGVLDPEYI EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHH EPFYNTFLIMFATLFNSDGLNGLEDIE HHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA