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The map label for this gene is ybbB [H]

Identifier: 116492344

GI number: 116492344

Start: 606127

End: 606879

Strand: Reverse

Name: ybbB [H]

Synonym: PEPE_0549

Alternate gene names: 116492344

Gene position: 606879-606127 (Counterclockwise)

Preceding gene: 116492348

Following gene: 116492343

Centisome position: 33.12

GC content: 31.87

Gene sequence:

>753_bases
TTGGCCACTCTAACACAAGGATATACATACTGGGAAAACAAACCTAGTTTTCAACTAGAATCTGATATCGGCTCCAATTA
TGTGATGTATATTATCGAAAGCGGTTCCTGTGAATTTGAATTTTCTCAATATTCCGGAATCGCTTCTGCCAATGATATTT
TATTAATTCCGCCTTATGTCAAATTCAAACGTAATATGCTTGAACCGATGTGTTTCCATTTCATTAGAGTAATCCCCGAT
CCAGTCACACCGACTTTTATAGGTAAACACCACTTAGGATCACATCGCTTTTATGAAAACTGTGAATTTCTACGTAAAAC
AAATTTCAGTTTAAACACAGATTCACATTATATCCAAAATCATATCGTAGAAGATTTCTTCATGCTTTTAAAAATAAAAA
AATTTAAACCTATAGAACCGAAACAAGCATTATCTAGAAATAACATTATTAATTCTGCAATTGAACTTATGGAACACAAT
TCTTCTCTTTCAATTAGTGAAATAGCCCAATTTACCAATACAAGTACCGCTTATTTTTCAAGGATTTTCAAAAAAACAAT
AGGTGAAACTCCCGTCTGTTTTTACACAAAAATAAAATTGAAAAAAGTTCAAAAACTACTAATCACTACAAATCTAACGT
TAGCAGAAATTTCCGAACAAACCGGTTTTACAGACCCATTTTATCTAAGTAAGGTTTTCACCACCCATTTAGGATGCTCA
CCACGTACATATCGAAAAAATCATATTATTTAA

Upstream 100 bases:

>100_bases
ATCCCTCCTTTTGTCTTAACAGTACTACAAAGGAATTCTCCACTCCATTTACTTTTAAGCCCAAAACATGTATTATTTTG
ACCAAAAAGAGGTGATACTT

Downstream 100 bases:

>100_bases
CATACCAAAAGATAGGATAATAAAATGCATATTAGGAAATATCAAATCACTGACGAAGATTCAACTTTAATGATGATTTC
TAAGTCTATTCGTGAAACTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MATLTQGYTYWENKPSFQLESDIGSNYVMYIIESGSCEFEFSQYSGIASANDILLIPPYVKFKRNMLEPMCFHFIRVIPD
PVTPTFIGKHHLGSHRFYENCEFLRKTNFSLNTDSHYIQNHIVEDFFMLLKIKKFKPIEPKQALSRNNIINSAIELMEHN
SSLSISEIAQFTNTSTAYFSRIFKKTIGETPVCFYTKIKLKKVQKLLITTNLTLAEISEQTGFTDPFYLSKVFTTHLGCS
PRTYRKNHII

Sequences:

>Translated_250_residues
MATLTQGYTYWENKPSFQLESDIGSNYVMYIIESGSCEFEFSQYSGIASANDILLIPPYVKFKRNMLEPMCFHFIRVIPD
PVTPTFIGKHHLGSHRFYENCEFLRKTNFSLNTDSHYIQNHIVEDFFMLLKIKKFKPIEPKQALSRNNIINSAIELMEHN
SSLSISEIAQFTNTSTAYFSRIFKKTIGETPVCFYTKIKLKKVQKLLITTNLTLAEISEQTGFTDPFYLSKVFTTHLGCS
PRTYRKNHII
>Mature_249_residues
ATLTQGYTYWENKPSFQLESDIGSNYVMYIIESGSCEFEFSQYSGIASANDILLIPPYVKFKRNMLEPMCFHFIRVIPDP
VTPTFIGKHHLGSHRFYENCEFLRKTNFSLNTDSHYIQNHIVEDFFMLLKIKKFKPIEPKQALSRNNIINSAIELMEHNS
SLSISEIAQFTNTSTAYFSRIFKKTIGETPVCFYTKIKLKKVQKLLITTNLTLAEISEQTGFTDPFYLSKVFTTHLGCSP
RTYRKNHII

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002491 [H]

Pfam domain/function: PF00165 HTH_AraC; PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 28993; Mature: 28862

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLTQGYTYWENKPSFQLESDIGSNYVMYIIESGSCEFEFSQYSGIASANDILLIPPYV
CCCCCCCEEEECCCCCEEECCCCCCCEEEEEEECCCCEEEHHHHCCCCCCCCEEEECCHH
KFKRNMLEPMCFHFIRVIPDPVTPTFIGKHHLGSHRFYENCEFLRKTNFSLNTDSHYIQN
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH
HIVEDFFMLLKIKKFKPIEPKQALSRNNIINSAIELMEHNSSLSISEIAQFTNTSTAYFS
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHH
RIFKKTIGETPVCFYTKIKLKKVQKLLITTNLTLAEISEQTGFTDPFYLSKVFTTHLGCS
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCC
PRTYRKNHII
CCCCCCCCCC
>Mature Secondary Structure 
ATLTQGYTYWENKPSFQLESDIGSNYVMYIIESGSCEFEFSQYSGIASANDILLIPPYV
CCCCCCEEEECCCCCEEECCCCCCCEEEEEEECCCCEEEHHHHCCCCCCCCEEEECCHH
KFKRNMLEPMCFHFIRVIPDPVTPTFIGKHHLGSHRFYENCEFLRKTNFSLNTDSHYIQN
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH
HIVEDFFMLLKIKKFKPIEPKQALSRNNIINSAIELMEHNSSLSISEIAQFTNTSTAYFS
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHH
RIFKKTIGETPVCFYTKIKLKKVQKLLITTNLTLAEISEQTGFTDPFYLSKVFTTHLGCS
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCC
PRTYRKNHII
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]