BacMap

Definition	Pediococcus pentosaceus ATCC 25745, complete genome.
Accession	NC_008525
Length	1,832,387

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The map label for this gene is ydfG [C]

Identifier: 116492340

GI number: 116492340

Start: 602575

End: 603306

Strand: Reverse

Name: ydfG [C]

Synonym: PEPE_0545

Alternate gene names: 116492340

Gene position: 603306-602575 (Counterclockwise)

Preceding gene: 116492343

Following gene: 116492337

Centisome position: 32.92

GC content: 41.39

Gene sequence:

>732_bases
ATGAATAAACCATTAATTGTTATTACTGGTGCTAGCTCTGGTTTTGGAGCAGAAATAGCCAAAATTTTTAATCAGGCAGG
TTACCCTGAATTATTACTAGGTCGCCGAGTTGAAAAGATTCAAGCTTTACCGCTTAACTTTGAAAACGTCATGATTGAAA
GCGTCGATGTAACAGATCAAGCTCAATTTAAAACAGCTATTGAACATGCTGAAGCTAAATTTGGACCAGTTGACTTACTC
GTTAACAACGCTGGGGTGATGCTATTAGGCAACGTGACTACCCAAAGCCCAACCGAGTGGCAAACCATGTTGGATACTAA
TGTTATGGGCGTTTTAAATGGAACCCAAATTATTTTACCCAGCATGTTAGAGCGCGAACATGGAACCATCATTAATATGT
CATCCCTAGCTGGTAAGAAGACCTTCGTTAACCATGCGGCTTATGTTGCTTCTAAATTCGGTGTTCATAGACTTAGCGAA
ACTATCCGAGAAGAAGTTTCTGGTAAAAATGTCCGAATCTCAATGGTTGCCCCAGGCGCTGCTGAAACTGAACTCCTCAC
CCACGTTACTGACCAAAATGCCTTGGTCGATTATGGCGAATGGAAAAAGAGTATGGGTGGTATCACGATGGATCCCAAAC
ATGTTGCTGAAAGTGTTAAGTTCATTTATGATATGCCACAAGCGGTTAACATCCGTGAATTAGCAATCGCAGCCACTCGT
CAAGATAGTTAA

Upstream 100 bases:

>100_bases
CCAATTAAATATGTTTTCATTTTTAAAATTTCTCCTTGACTTGGAGTTAACTCCAAGTAGTAACATCAAATATATCATAA
AACAAAGGTAGGTACATAAT

Downstream 100 bases:

>100_bases
ATAAAAGAGGTCATCGCATTAAAAGCGACGGCCTCTTTTATTTTTCAATTCTGGGTGACTCTGGAATAGTGCCGTTAGTT
CGGCCTGCATTTCAGGATTA

Product: Short-chain alcohol dehydrogenase of unknown specificity

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNKPLIVITGASSGFGAEIAKIFNQAGYPELLLGRRVEKIQALPLNFENVMIESVDVTDQAQFKTAIEHAEAKFGPVDLL
VNNAGVMLLGNVTTQSPTEWQTMLDTNVMGVLNGTQIILPSMLEREHGTIINMSSLAGKKTFVNHAAYVASKFGVHRLSE
TIREEVSGKNVRISMVAPGAAETELLTHVTDQNALVDYGEWKKSMGGITMDPKHVAESVKFIYDMPQAVNIRELAIAATR
QDS

Sequences:

>Translated_243_residues
MNKPLIVITGASSGFGAEIAKIFNQAGYPELLLGRRVEKIQALPLNFENVMIESVDVTDQAQFKTAIEHAEAKFGPVDLL
VNNAGVMLLGNVTTQSPTEWQTMLDTNVMGVLNGTQIILPSMLEREHGTIINMSSLAGKKTFVNHAAYVASKFGVHRLSE
TIREEVSGKNVRISMVAPGAAETELLTHVTDQNALVDYGEWKKSMGGITMDPKHVAESVKFIYDMPQAVNIRELAIAATR
QDS
>Mature_243_residues
MNKPLIVITGASSGFGAEIAKIFNQAGYPELLLGRRVEKIQALPLNFENVMIESVDVTDQAQFKTAIEHAEAKFGPVDLL
VNNAGVMLLGNVTTQSPTEWQTMLDTNVMGVLNGTQIILPSMLEREHGTIINMSSLAGKKTFVNHAAYVASKFGVHRLSE
TIREEVSGKNVRISMVAPGAAETELLTHVTDQNALVDYGEWKKSMGGITMDPKHVAESVKFIYDMPQAVNIRELAIAATR
QDS

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI109715829, Length=253, Percent_Identity=26.0869565217391, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI4503817, Length=196, Percent_Identity=32.1428571428571, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI4758504, Length=236, Percent_Identity=31.3559322033898, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI7706318, Length=211, Percent_Identity=26.0663507109005, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI31542939, Length=243, Percent_Identity=28.8065843621399, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI40254992, Length=195, Percent_Identity=27.1794871794872, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI22507405, Length=195, Percent_Identity=31.7948717948718, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI157739938, Length=226, Percent_Identity=27.4336283185841, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4557649, Length=189, Percent_Identity=31.2169312169312, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI19743808, Length=237, Percent_Identity=28.2700421940928, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI150247226, Length=200, Percent_Identity=27.5, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI7657478, Length=201, Percent_Identity=28.3582089552239, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI19923817, Length=210, Percent_Identity=23.3333333333333, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI40548397, Length=189, Percent_Identity=29.1005291005291, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI214010158, Length=189, Percent_Identity=29.1005291005291, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI214010156, Length=189, Percent_Identity=29.1005291005291, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI22758144, Length=189, Percent_Identity=29.1005291005291, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI83715985, Length=237, Percent_Identity=30.8016877637131, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI224922801, Length=164, Percent_Identity=32.9268292682927, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI50726952, Length=187, Percent_Identity=29.9465240641711, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI44680136, Length=183, Percent_Identity=26.2295081967213, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI44680133, Length=183, Percent_Identity=26.2295081967213, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI17738292, Length=183, Percent_Identity=26.2295081967213, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI7705925, Length=181, Percent_Identity=25.9668508287293, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI59889578, Length=177, Percent_Identity=28.2485875706215, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI223718074, Length=201, Percent_Identity=28.8557213930348, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI5031737, Length=188, Percent_Identity=29.2553191489362, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787820, Length=240, Percent_Identity=32.0833333333333, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787335, Length=192, Percent_Identity=29.6875, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082100, Length=191, Percent_Identity=31.9371727748691, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790717, Length=221, Percent_Identity=25.7918552036199, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786812, Length=244, Percent_Identity=24.5901639344262, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786701, Length=227, Percent_Identity=26.431718061674, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787526, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082160, Length=187, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787905, Length=191, Percent_Identity=28.7958115183246, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789208, Length=183, Percent_Identity=25.6830601092896, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788459, Length=185, Percent_Identity=27.5675675675676, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=229, Percent_Identity=27.9475982532751, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71994600, Length=190, Percent_Identity=26.8421052631579, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115534660, Length=201, Percent_Identity=28.3582089552239, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=225, Percent_Identity=25.3333333333333, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=237, Percent_Identity=26.5822784810127, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=249, Percent_Identity=26.1044176706827, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=243, Percent_Identity=25.9259259259259, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=237, Percent_Identity=27.0042194092827, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=223, Percent_Identity=28.6995515695067, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=244, Percent_Identity=25, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=190, Percent_Identity=27.3684210526316, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=240, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=186, Percent_Identity=26.8817204301075, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=249, Percent_Identity=24.8995983935743, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=235, Percent_Identity=26.8085106382979, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=237, Percent_Identity=27.8481012658228, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=225, Percent_Identity=28, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=180, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=180, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=236, Percent_Identity=25, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6322227, Length=191, Percent_Identity=26.1780104712042, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=187, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=130, Percent_Identity=31.5384615384615, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI23397609, Length=228, Percent_Identity=30.7017543859649, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI21358495, Length=224, Percent_Identity=30.3571428571429, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI116007236, Length=247, Percent_Identity=30.3643724696356, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI28571387, Length=249, Percent_Identity=28.1124497991968, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI21357041, Length=226, Percent_Identity=29.2035398230088, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24641232, Length=245, Percent_Identity=29.3877551020408, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644339, Length=186, Percent_Identity=30.6451612903226, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24641388, Length=245, Percent_Identity=29.7959183673469, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=30.7291666666667, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI116007234, Length=246, Percent_Identity=29.6747967479675, Blast_Score=87, Evalue=7e-18,
Organism=Drosophila melanogaster, GI281364494, Length=247, Percent_Identity=27.9352226720648, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24643142, Length=181, Percent_Identity=29.8342541436464, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007238, Length=175, Percent_Identity=32.5714285714286, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24648693, Length=244, Percent_Identity=26.2295081967213, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21355889, Length=244, Percent_Identity=26.2295081967213, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648944, Length=246, Percent_Identity=27.2357723577236, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281364892, Length=226, Percent_Identity=29.2035398230088, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI116007232, Length=183, Percent_Identity=32.7868852459016, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24639444, Length=239, Percent_Identity=26.3598326359833, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21357673, Length=189, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21355631, Length=175, Percent_Identity=28, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24663911, Length=195, Percent_Identity=28.2051282051282, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24640492, Length=194, Percent_Identity=25.2577319587629, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI18859837, Length=188, Percent_Identity=29.7872340425532, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17737361, Length=235, Percent_Identity=25.531914893617, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24584748, Length=193, Percent_Identity=29.0155440414508, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI161076933, Length=193, Percent_Identity=29.0155440414508, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24584752, Length=188, Percent_Identity=27.6595744680851, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26483; Mature: 26483

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPLIVITGASSGFGAEIAKIFNQAGYPELLLGRRVEKIQALPLNFENVMIESVDVTDQ
CCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCH
AQFKTAIEHAEAKFGPVDLLVNNAGVMLLGNVTTQSPTEWQTMLDTNVMGVLNGTQIILP
HHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHCCEEEEECCCEEEHH
SMLEREHGTIINMSSLAGKKTFVNHAAYVASKFGVHRLSETIREEVSGKNVRISMVAPGA
HHHHHCCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
AETELLTHVTDQNALVDYGEWKKSMGGITMDPKHVAESVKFIYDMPQAVNIRELAIAATR
CHHHHHHHCCCCCCEECHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHEEEECC
QDS
CCC
>Mature Secondary Structure
MNKPLIVITGASSGFGAEIAKIFNQAGYPELLLGRRVEKIQALPLNFENVMIESVDVTDQ
CCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCH
AQFKTAIEHAEAKFGPVDLLVNNAGVMLLGNVTTQSPTEWQTMLDTNVMGVLNGTQIILP
HHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHCCEEEEECCCEEEHH
SMLEREHGTIINMSSLAGKKTFVNHAAYVASKFGVHRLSETIREEVSGKNVRISMVAPGA
HHHHHCCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
AETELLTHVTDQNALVDYGEWKKSMGGITMDPKHVAESVKFIYDMPQAVNIRELAIAATR
CHHHHHHHCCCCCCEECHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHEEEECC
QDS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA