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The map label for this gene is licD [H]

Identifier: 116492338

GI number: 116492338

Start: 600943

End: 601755

Strand: Direct

Name: licD [H]

Synonym: PEPE_0543

Alternate gene names: 116492338

Gene position: 600943-601755 (Clockwise)

Preceding gene: 116492336

Following gene: 116492339

Centisome position: 32.8

GC content: 38.38

Gene sequence:

>813_bases
ATGAGCCAGATTGATGAAATTCATCGAGTCGAGATTGAGATGTTAAAAGTTATTATCGAAATTTGCGATAAACATGATAT
TAAATACATGCTAATCGGTGGAACATTGCTGGGGGCGATCCGGCACGGCGGATTTATTCCATGGGATGATGATGTCGATC
TAGGGATGACGCGTGAAAATTACGACGAGTTCGCTAGGGTCGCGCCAGTTGAGTTCCAAAATACACATTACTTTATGCAA
ACGGCGGATACGGATCCCAATTTTGCATTTAGTTATATGAAGGTTTTAGATACTAATACTTATATAGAAGAAAAAAATAA
TGTTAATGATGCCCACAAGGGAATTTTTATTGATATTTTTCCTTTTGATAAGGTTCCTCGTCAACCTGAAATTCGCCAGG
CAGTCTACAATCGCTTTAAGATTAATGACGCCGCAATTCTCGTACGGCTAGGGTACAACATTATCAAAACACCATTCCGT
AAAGCGCCTAATGAGAAGCCTTTAGAGTTGTTCATGAGTGTAGCCAAGTTAAAAGAGCGACGTGAAAATATCATGCGTCT
GTATGATAATGAACCATTTCATCATTATAAAAACTATGCTTCTCAGTACGCCTATGATAAAGAAGTTTTAAGTCAGTCCG
AATTAATAGAACTAACCACGCATAAGTTTGAATCCATTGAAGTTTCGATTCCCAAACACTACGACCGTATTTTGAAACGG
ATGTATGGTGATTACATGCAGCTGCCACCAGAAAAAGAACGCGTTTCTAAGCACATTGATACGGTGATTATTAATGGAAA
ACGAATCGAATAG

Upstream 100 bases:

>100_bases
ATCATAATACATGATTCAAGAAAGTCAAACAGTTTTGCCTATTGCTTAACTATTCCTTAAATGTCACAATTTAAGTAACT
AGGAAAAGAGGAGGAGAGCC

Downstream 100 bases:

>100_bases
AACCGAGGAATTTTAATGGAAAAACTAAAAGAGCGCATGGATGCGTTTAGTGACGCGGTCATTGCGATTATCATTACAAT
TATGGTATTGGAATTGCCAA

Product: LPS biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MSQIDEIHRVEIEMLKVIIEICDKHDIKYMLIGGTLLGAIRHGGFIPWDDDVDLGMTRENYDEFARVAPVEFQNTHYFMQ
TADTDPNFAFSYMKVLDTNTYIEEKNNVNDAHKGIFIDIFPFDKVPRQPEIRQAVYNRFKINDAAILVRLGYNIIKTPFR
KAPNEKPLELFMSVAKLKERRENIMRLYDNEPFHHYKNYASQYAYDKEVLSQSELIELTTHKFESIEVSIPKHYDRILKR
MYGDYMQLPPEKERVSKHIDTVIINGKRIE

Sequences:

>Translated_270_residues
MSQIDEIHRVEIEMLKVIIEICDKHDIKYMLIGGTLLGAIRHGGFIPWDDDVDLGMTRENYDEFARVAPVEFQNTHYFMQ
TADTDPNFAFSYMKVLDTNTYIEEKNNVNDAHKGIFIDIFPFDKVPRQPEIRQAVYNRFKINDAAILVRLGYNIIKTPFR
KAPNEKPLELFMSVAKLKERRENIMRLYDNEPFHHYKNYASQYAYDKEVLSQSELIELTTHKFESIEVSIPKHYDRILKR
MYGDYMQLPPEKERVSKHIDTVIINGKRIE
>Mature_269_residues
SQIDEIHRVEIEMLKVIIEICDKHDIKYMLIGGTLLGAIRHGGFIPWDDDVDLGMTRENYDEFARVAPVEFQNTHYFMQT
ADTDPNFAFSYMKVLDTNTYIEEKNNVNDAHKGIFIDIFPFDKVPRQPEIRQAVYNRFKINDAAILVRLGYNIIKTPFRK
APNEKPLELFMSVAKLKERRENIMRLYDNEPFHHYKNYASQYAYDKEVLSQSELIELTTHKFESIEVSIPKHYDRILKRM
YGDYMQLPPEKERVSKHIDTVIINGKRIE

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 31930; Mature: 31799

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIDEIHRVEIEMLKVIIEICDKHDIKYMLIGGTLLGAIRHGGFIPWDDDVDLGMTREN
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHC
YDEFARVAPVEFQNTHYFMQTADTDPNFAFSYMKVLDTNTYIEEKNNVNDAHKGIFIDIF
HHHHHHHCCCEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHCCEEEEEE
PFDKVPRQPEIRQAVYNRFKINDAAILVRLGYNIIKTPFRKAPNEKPLELFMSVAKLKER
CCCCCCCCCHHHHHHHHHHCCCHHEEEEECCHHHHHCHHHHCCCCCHHHHHHHHHHHHHH
RENIMRLYDNEPFHHYKNYASQYAYDKEVLSQSELIELTTHKFESIEVSIPKHYDRILKR
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCHHHHHHHHH
MYGDYMQLPPEKERVSKHIDTVIINGKRIE
HHHHHHCCCCHHHHHHHHHCEEEECCCCCC
>Mature Secondary Structure 
SQIDEIHRVEIEMLKVIIEICDKHDIKYMLIGGTLLGAIRHGGFIPWDDDVDLGMTREN
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHC
YDEFARVAPVEFQNTHYFMQTADTDPNFAFSYMKVLDTNTYIEEKNNVNDAHKGIFIDIF
HHHHHHHCCCEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHCCEEEEEE
PFDKVPRQPEIRQAVYNRFKINDAAILVRLGYNIIKTPFRKAPNEKPLELFMSVAKLKER
CCCCCCCCCHHHHHHHHHHCCCHHEEEEECCHHHHHCHHHHCCCCCHHHHHHHHHHHHHH
RENIMRLYDNEPFHHYKNYASQYAYDKEVLSQSELIELTTHKFESIEVSIPKHYDRILKR
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCHHHHHHHHH
MYGDYMQLPPEKERVSKHIDTVIINGKRIE
HHHHHHCCCCHHHHHHHHHCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]