| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is agaR [H]
Identifier: 116492312
GI number: 116492312
Start: 564097
End: 566298
Strand: Direct
Name: agaR [H]
Synonym: PEPE_0513
Alternate gene names: 116492312
Gene position: 564097-566298 (Clockwise)
Preceding gene: 116492311
Following gene: 116492313
Centisome position: 30.78
GC content: 40.51
Gene sequence:
>2202_bases ATGTCATTAATTACGGTTGATCAAGCGAATCGCGTTTTTCATTTGCATAATCAAAATCTTTCTTATATCTTTGCAGTTGA GCAGGGCGGTACTTTAAGTCATTTATATTTTGGTGGGCATGTGGACCATTACCACGGTGAATTGCGCTATCCACGAGTCG ATCGTGGTTTTTCCGGTAATTTACCGGGATCGACTGATCGCACTTTTTCACGTGATACTTTGCCGAAAGAATACAGTACG GCTGGTGAAATGGATTATCACTTACCAGCAGCAATCGTTCGTCATACTGATGGGGCTAATGCATTATTCTTAGTTTATCA GGGATATCGGATCGAAGCGGGTAAACCAAAGTTAAGCGGGCTACCGGCAGCTTTTGTGGAGGATGAAACAGAGGCAGAAA CTTTGACCATCGTATTAGTTGATCAAGTAAGCCAAGTCGAGTTTGATCTACAATATACGATCTACCGTGATCGACCAGTG GTCACGCGCTCGGTGCAAGTCTGTAATCAAGGTGATCATGCAGTTAATTTAGAAAAAGTTGCTTCAATGCAAATCGATTT TACGGATCGTCAGTTCGAAACAATTACATTACCTGGAGCGCATGCCAATGAACGCCATCCAGAGCGGGGTTCGATCAATT ATGGAATACAGACTTTTGGTAGTTTGCGGGGTACTTCCAGTCATCAAATGAATCCATTTTTGGCCTTGGTTGATCACACT ACGACAGAGTTTAGCGGTGATGCATATGGTTTTAACTTGGTCTATTCTGGCAATCACGCATTTGAACTGGAAAAGGATCA ACTTGACCAACTTCATCTAATGGTCGGTATTAATAGTTATAATTTCAATTGGCAACTTAAAGCTGGCGCGACTTTCCAAA CACCAGAAGTATTAATGGTCTATACAAATAAAGGTTTGAACGCGATGAGCCAAGCCTACCACCATTTGATCCGTGAACGA GTAGTACGTAGTGAGTTTAAAAATCAAGAGCGTCCGATTGTAGTTAACAACTGGGAAGCAACATTCTTTGATTTTAACGA AGCAAAATTGAAGCCGATCGTGGATGAAGCCAAGCAGTTAGGCATTGAAATGTTTGTTTTAGATGATGGTTGGTTTGGAC ATCGTGATGATGATAATTCTTCATTAGGTGACTGGCAAGTTGATCATAGAAAATTTCCGCAGGGCTTAAATCATTTTGTG AAATATGTGCATGAACAAGGCCTTAAATTTGGTATTTGGTTAGAACCAGAAATGATTTCATATGATTCAAAGCTATATCA GCAACATCCAGATTATTTAATGCAAGTTCCTGGCCGATCACCAAGTCCATCACGTAATCAGTATATTTTAGATCTTGGTC GGCAAGCCGTACGAAATAATATTTTTGACCAGCTTGATCAACTTCTAAAATCGAAGCAAATTGATTATATTAAATGGGAT ATGAATCGCCACCTTTCAGATATTTATTCCGTTGCTTTACCACCAGAACGCCAGGGTGAGGTCTATCATCGGTATGTTTT AGGTCTGTATGAATTATTGGAACGGTTGACGACAGCTTATCCGCATATCTTATTTGAAGGTTGCTCAGGTGGTGGCGGTC GATTTGATGCTGGGATGGCTTACTATATGCCACAGATTTGGGCTAGTGATAACACTGATGCAGTTGCGCGATTGACGATT CAATATGGGACTAGTTTAGCCTATCCAATTTCGTTAGCTACCGCCCATGTCTCAGTGAGCCCTAATCAGCAAACAGGTCG TGAAACGTCAATGTCGACTAGAAGTGCAGTAGCGGCAAGCGGTGTCTTAGGTTATGAATTGGATCTAACACAACTCAGTT CAGCGGATAAACAAATAGTCCAAAAGCAAGTTGTACAGTATAAACAGATTAGACCACTGATTCAATTTGGTGAATTTTAT CGCTTAAAATCACCAATTACTAGCAATCAAGCAGCATGGATGTTTGTTTCACCTCAACAAGATGAAGCGATTGTCATGGT ATTTAATCTGACATCCTATGCCCAACCCAGTTTGACAAAAACCAAATTAGTCGGTTTGAATCCCAAGCTGAATTACCAAA ATATTGCTACTAAGGCGATATTTGGTGGTGATGAATTGATGCAACTTGGCTTCTATGATCCAGTAGTCTACCAAGATTAC ACAACAAAGGTCTATCATTTTAAAGCAGTCACTGAGAACTAA
Upstream 100 bases:
>100_bases TAAAGCAACTGATAATATTTTACAGTTGCATACTAAAGCATAATGTGCCACTGGTTATCATTTAATTTTAAAATTAGTAA TTCCCCGAGGAGGAAATAAA
Downstream 100 bases:
>100_bases CTTTTACGTAAATTGCAATAGTAAGTTAACCAGTGCCGGTAAAGTACACAGACGAAAGGGCTCATGGGAGTTCCAGGTGG ATCAGGCGGCGCGGCCTTTA
Product: Alpha-galactosidase
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 733; Mature: 732
Protein sequence:
>733_residues MSLITVDQANRVFHLHNQNLSYIFAVEQGGTLSHLYFGGHVDHYHGELRYPRVDRGFSGNLPGSTDRTFSRDTLPKEYST AGEMDYHLPAAIVRHTDGANALFLVYQGYRIEAGKPKLSGLPAAFVEDETEAETLTIVLVDQVSQVEFDLQYTIYRDRPV VTRSVQVCNQGDHAVNLEKVASMQIDFTDRQFETITLPGAHANERHPERGSINYGIQTFGSLRGTSSHQMNPFLALVDHT TTEFSGDAYGFNLVYSGNHAFELEKDQLDQLHLMVGINSYNFNWQLKAGATFQTPEVLMVYTNKGLNAMSQAYHHLIRER VVRSEFKNQERPIVVNNWEATFFDFNEAKLKPIVDEAKQLGIEMFVLDDGWFGHRDDDNSSLGDWQVDHRKFPQGLNHFV KYVHEQGLKFGIWLEPEMISYDSKLYQQHPDYLMQVPGRSPSPSRNQYILDLGRQAVRNNIFDQLDQLLKSKQIDYIKWD MNRHLSDIYSVALPPERQGEVYHRYVLGLYELLERLTTAYPHILFEGCSGGGGRFDAGMAYYMPQIWASDNTDAVARLTI QYGTSLAYPISLATAHVSVSPNQQTGRETSMSTRSAVAASGVLGYELDLTQLSSADKQIVQKQVVQYKQIRPLIQFGEFY RLKSPITSNQAAWMFVSPQQDEAIVMVFNLTSYAQPSLTKTKLVGLNPKLNYQNIATKAIFGGDELMQLGFYDPVVYQDY TTKVYHFKAVTEN
Sequences:
>Translated_733_residues MSLITVDQANRVFHLHNQNLSYIFAVEQGGTLSHLYFGGHVDHYHGELRYPRVDRGFSGNLPGSTDRTFSRDTLPKEYST AGEMDYHLPAAIVRHTDGANALFLVYQGYRIEAGKPKLSGLPAAFVEDETEAETLTIVLVDQVSQVEFDLQYTIYRDRPV VTRSVQVCNQGDHAVNLEKVASMQIDFTDRQFETITLPGAHANERHPERGSINYGIQTFGSLRGTSSHQMNPFLALVDHT TTEFSGDAYGFNLVYSGNHAFELEKDQLDQLHLMVGINSYNFNWQLKAGATFQTPEVLMVYTNKGLNAMSQAYHHLIRER VVRSEFKNQERPIVVNNWEATFFDFNEAKLKPIVDEAKQLGIEMFVLDDGWFGHRDDDNSSLGDWQVDHRKFPQGLNHFV KYVHEQGLKFGIWLEPEMISYDSKLYQQHPDYLMQVPGRSPSPSRNQYILDLGRQAVRNNIFDQLDQLLKSKQIDYIKWD MNRHLSDIYSVALPPERQGEVYHRYVLGLYELLERLTTAYPHILFEGCSGGGGRFDAGMAYYMPQIWASDNTDAVARLTI QYGTSLAYPISLATAHVSVSPNQQTGRETSMSTRSAVAASGVLGYELDLTQLSSADKQIVQKQVVQYKQIRPLIQFGEFY RLKSPITSNQAAWMFVSPQQDEAIVMVFNLTSYAQPSLTKTKLVGLNPKLNYQNIATKAIFGGDELMQLGFYDPVVYQDY TTKVYHFKAVTEN >Mature_732_residues SLITVDQANRVFHLHNQNLSYIFAVEQGGTLSHLYFGGHVDHYHGELRYPRVDRGFSGNLPGSTDRTFSRDTLPKEYSTA GEMDYHLPAAIVRHTDGANALFLVYQGYRIEAGKPKLSGLPAAFVEDETEAETLTIVLVDQVSQVEFDLQYTIYRDRPVV TRSVQVCNQGDHAVNLEKVASMQIDFTDRQFETITLPGAHANERHPERGSINYGIQTFGSLRGTSSHQMNPFLALVDHTT TEFSGDAYGFNLVYSGNHAFELEKDQLDQLHLMVGINSYNFNWQLKAGATFQTPEVLMVYTNKGLNAMSQAYHHLIRERV VRSEFKNQERPIVVNNWEATFFDFNEAKLKPIVDEAKQLGIEMFVLDDGWFGHRDDDNSSLGDWQVDHRKFPQGLNHFVK YVHEQGLKFGIWLEPEMISYDSKLYQQHPDYLMQVPGRSPSPSRNQYILDLGRQAVRNNIFDQLDQLLKSKQIDYIKWDM NRHLSDIYSVALPPERQGEVYHRYVLGLYELLERLTTAYPHILFEGCSGGGGRFDAGMAYYMPQIWASDNTDAVARLTIQ YGTSLAYPISLATAHVSVSPNQQTGRETSMSTRSAVAASGVLGYELDLTQLSSADKQIVQKQVVQYKQIRPLIQFGEFYR LKSPITSNQAAWMFVSPQQDEAIVMVFNLTSYAQPSLTKTKLVGLNPKLNYQNIATKAIFGGDELMQLGFYDPVVYQDYT TKVYHFKAVTEN
Specific function: Alpha-galactosidase associated with the raffinose operon [H]
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 83312; Mature: 83180
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: PS00512 ALPHA_GALACTOSIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLITVDQANRVFHLHNQNLSYIFAVEQGGTLSHLYFGGHVDHYHGELRYPRVDRGFSGN CCEEEEECCCCEEEEECCCCEEEEEEECCCCEEEEEECCCEECCCCCEECCCCCCCCCCC LPGSTDRTFSRDTLPKEYSTAGEMDYHLPAAIVRHTDGANALFLVYQGYRIEAGKPKLSG CCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEEECCCCCEEEEEEECEEEECCCCCCCC LPAAFVEDETEAETLTIVLVDQVSQVEFDLQYTIYRDRPVVTRSVQVCNQGDHAVNLEKV CCCCEECCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCEEHHHHHHCCCCCEEEHHHH ASMQIDFTDRQFETITLPGAHANERHPERGSINYGIQTFGSLRGTSSHQMNPFLALVDHT EEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCHHHHHCCCCCCCCCCCCEEEEEECC TTEFSGDAYGFNLVYSGNHAFELEKDQLDQLHLMVGINSYNFNWQLKAGATFQTPEVLMV CCCCCCCCEEEEEEECCCEEEEECHHHHCEEEEEEEEECCCEEEEEECCCEECCCCEEEE YTNKGLNAMSQAYHHLIRERVVRSEFKNQERPIVVNNWEATFFDFNEAKLKPIVDEAKQL EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHC GIEMFVLDDGWFGHRDDDNSSLGDWQVDHRKFPQGLNHFVKYVHEQGLKFGIWLEPEMIS CEEEEEEECCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHC YDSKLYQQHPDYLMQVPGRSPSPSRNQYILDLGRQAVRNNIFDQLDQLLKSKQIDYIKWD CCHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC MNRHLSDIYSVALPPERQGEVYHRYVLGLYELLERLTTAYPHILFEGCSGGGGRFDAGMA HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHH YYMPQIWASDNTDAVARLTIQYGTSLAYPISLATAHVSVSPNQQTGRETSMSTRSAVAAS HHCCEEECCCCCCEEEEEEEEECCCEEEEEEEEEEEEEECCCCCCCCHHCCHHHHHHHHC GVLGYELDLTQLSSADKQIVQKQVVQYKQIRPLIQFGEFYRLKSPITSNQAAWMFVSPQQ CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCCCCCCCEEEEEECCCC DEAIVMVFNLTSYAQPSLTKTKLVGLNPKLNYQNIATKAIFGGDELMQLGFYDPVVYQDY CCEEEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHEEEEECCHHHHEECCCCCEEECCC TTKVYHFKAVTEN CEEEEEEEEECCC >Mature Secondary Structure SLITVDQANRVFHLHNQNLSYIFAVEQGGTLSHLYFGGHVDHYHGELRYPRVDRGFSGN CEEEEECCCCEEEEECCCCEEEEEEECCCCEEEEEECCCEECCCCCEECCCCCCCCCCC LPGSTDRTFSRDTLPKEYSTAGEMDYHLPAAIVRHTDGANALFLVYQGYRIEAGKPKLSG CCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEEECCCCCEEEEEEECEEEECCCCCCCC LPAAFVEDETEAETLTIVLVDQVSQVEFDLQYTIYRDRPVVTRSVQVCNQGDHAVNLEKV CCCCEECCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCEEHHHHHHCCCCCEEEHHHH ASMQIDFTDRQFETITLPGAHANERHPERGSINYGIQTFGSLRGTSSHQMNPFLALVDHT EEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCHHHHHCCCCCCCCCCCCEEEEEECC TTEFSGDAYGFNLVYSGNHAFELEKDQLDQLHLMVGINSYNFNWQLKAGATFQTPEVLMV CCCCCCCCEEEEEEECCCEEEEECHHHHCEEEEEEEEECCCEEEEEECCCEECCCCEEEE YTNKGLNAMSQAYHHLIRERVVRSEFKNQERPIVVNNWEATFFDFNEAKLKPIVDEAKQL EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHC GIEMFVLDDGWFGHRDDDNSSLGDWQVDHRKFPQGLNHFVKYVHEQGLKFGIWLEPEMIS CEEEEEEECCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHC YDSKLYQQHPDYLMQVPGRSPSPSRNQYILDLGRQAVRNNIFDQLDQLLKSKQIDYIKWD CCHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC MNRHLSDIYSVALPPERQGEVYHRYVLGLYELLERLTTAYPHILFEGCSGGGGRFDAGMA HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHH YYMPQIWASDNTDAVARLTIQYGTSLAYPISLATAHVSVSPNQQTGRETSMSTRSAVAAS HHCCEEECCCCCCEEEEEEEEECCCEEEEEEEEEEEEEECCCCCCCCHHCCHHHHHHHHC GVLGYELDLTQLSSADKQIVQKQVVQYKQIRPLIQFGEFYRLKSPITSNQAAWMFVSPQQ CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCCCCCCCEEEEEECCCC DEAIVMVFNLTSYAQPSLTKTKLVGLNPKLNYQNIATKAIFGGDELMQLGFYDPVVYQDY CCEEEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHEEEEECCHHHHEECCCCCEEECCC TTKVYHFKAVTEN CEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA